Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121342g00004 ATGGCTAAGAAGCGAAAGGTCCGAGCCTCCGAACCCGAACCACCCAAACAAGAGCAAGAGCAAGAGCAAGAGCTTCCCCAACAGCAACAGCCACCACACGAAGAACTAACCATAGATCAAGAGCAAAGCATGGCCGTCGATGACGCCGTGCCACAACAAGACCAACCTCAAAACGACGTCGTAATACAAGAAGAACAAAACAACGAAGGAGAAGGAGAAGGAGAAGGCGAGGAAGAACAACAGCAACAAGAGGATCAGCAGCAACCACATCAAGAAGGAGGGGAAACCCTAGAAAGCCAAGAAGCGCAGATTCAACAGCAGGCTTCAGGTTCGGATTCGGTTCGTNNNNNNNNNNCTAACGGCTCCGAGCAGCAGCAGGAAGAGGAGGACCTCGATTTGGAAGACGAGCCAATCGAGAAGCTTCTAGAACCTTTCACGAAGGAGCAGCTGTACTCCCTTGTCAAGCAGGCCGTCGAGAAGCACCCTGATTTCGCAGAAACCGTTCGCCAGCTGGCAGATGTGGACCCCGCACACCGGAAGATCTTCGTCCATGGCCTTGGTTGGGACACTACTGCAGAAACCCTAACCGCCGTGTTCGGAAAATACGGCGAAATTGAAGATTGCAAGGCCGTGACGGACAAAATCTCCGGAAAATCGAAGGGATACGCGTTCATCCAATTCAAGCATCGCGCGGGGGCGAGAAGGGCGCTTAAGCAGCCTCAGAAGAAGATTGGGAACAGAACAACTTCGTGTCAATTAGCCTCCGCCGGACCAGTTCCGTCGTCGCAGCAGGTGGTCGCAGCGGGTGCTCCGGTTGTGTCTGAGTATACACAGAGGAAGATCTTTGTTAGCAATGTGAGCGCGGAGATTGATCCTCAGAGGCTTCTGGAATTCTTCAGGCAGTTCGGGGAGATTGAGGATGGTCCTCTTGGGATTGACAAGCAGACAGGAAAGCCGAAAGGGTTCGCTCTTTTCGTGTACAAAACAGTTGAGAGTGCTAAGAAGGCATTGGAGGAGCCAAACAAGAACTTTGAAGGGCACACCCTTTATTGCCAGAAGGCCGTTGATGGTCCCAAAGGGTTCAATAAGGGTGGATTTCATCAGCAGCAGCATCACCATCAACAGCACTATCAGCACCAATCACATCACCATCATCAGGGTCACTTTCACAGGAAGGATAAGAACAAGTATTCGGCTGGTGGGCCTGCACATGGAGGTGGCGGTCACTTGATGGCACCATCAGCTCCAGGGCCTGCTGTTGGAGGTTACAACCCTGGTGTGCCACCTGCTGCTGCTGCGGCACAGGGTCTCAACCCTGCACTTGGGCAAGCTCTGACGGCATTGCTTGCTAATCAGGGTGCTGGATTGGGGCTTGGAAACCTTCTTGGAGGGATGGGTGGTGCTCCTGTGAACCAGCCTGGTCCGCCTGCTGGTGGATATGGGAGTCAGCCAGCTATGGGATATGGAAACCAGCCGGGGATGCAGCCGCAATACCAGAATCCTCAGATGGGGCAGAGTAGTGGGGTTCGGCCTCACCCTGGTGCTGGCGCGCCTTACATGGGCCATTAG 1569 0.5347 MAKKRKVRASEPEPPKQEQEQEQELPQQQQPPHEELTIDQEQSMAVDDAVPQQDQPQNDVVIQEEQNNEGEGEGEGEEEQQQQEDQQQPHQEGGETLESQEAQIQQQASGSDSVRXXXXNGSEQQQEEEDLDLEDEPIEKLLEPFTKEQLYSLVKQAVEKHPDFAETVRQLADVDPAHRKIFVHGLGWDTTAETLTAVFGKYGEIEDCKAVTDKISGKSKGYAFIQFKHRAGARRALKQPQKKIGNRTTSCQLASAGPVPSSQQVVAAGAPVVSEYTQRKIFVSNVSAEIDPQRLLEFFRQFGEIEDGPLGIDKQTGKPKGFALFVYKTVESAKKALEEPNKNFEGHTLYCQKAVDGPKGFNKGGFHQQQHHHQQHYQHQSHHHHQGHFHRKDKNKYSAGGPAHGGGGHLMAPSAPGPAVGGYNPGVPPAAAAAQGLNPALGQALTALLANQGAGLGLGNLLGGMGGAPVNQPGPPAGGYGSQPAMGYGNQPGMQPQYQNPQMGQSSGVRPHPGAGAPYMGH 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121342g00004 522 MobiDBLite consensus disorder prediction 488 507 - -
Stsc121342g00004 522 MobiDBLite consensus disorder prediction 1 138 - -
Stsc121342g00004 522 MobiDBLite consensus disorder prediction 1 20 - -
Stsc121342g00004 522 MobiDBLite consensus disorder prediction 21 37 - -
Stsc121342g00004 522 MobiDBLite consensus disorder prediction 456 522 - -
Stsc121342g00004 522 Gene3D - 52 264 IPR012677 -
Stsc121342g00004 522 MobiDBLite consensus disorder prediction 360 433 - -
Stsc121342g00004 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 356 IPR000504 GO:0003723
Stsc121342g00004 522 SMART rrm1_1 280 352 IPR000504 GO:0003723
Stsc121342g00004 522 SMART rrm1_1 180 252 IPR000504 GO:0003723
Stsc121342g00004 522 MobiDBLite consensus disorder prediction 66 82 - -
Stsc121342g00004 522 MobiDBLite consensus disorder prediction 46 65 - -
Stsc121342g00004 522 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 63 377 - -
Stsc121342g00004 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 349 IPR000504 GO:0003723
Stsc121342g00004 522 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 248 IPR000504 GO:0003723
Stsc121342g00004 522 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 256 IPR000504 GO:0003723
Stsc121342g00004 522 MobiDBLite consensus disorder prediction 86 124 - -
Stsc121342g00004 522 Gene3D - 270 396 IPR012677 -
Stsc121342g00004 522 SUPERFAMILY RNA-binding domain, RBD 170 258 IPR035979 GO:0003676
Stsc121342g00004 522 SUPERFAMILY RNA-binding domain, RBD 275 372 IPR035979 GO:0003676
Stsc121342g00004 522 MobiDBLite consensus disorder prediction 369 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121342g00004 Stsc-Chr121342 24288 28928 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121342g00004 262 358 C2H2 Transcription Factor Family AT2G19380 29.897 2.78e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121342g00004 K12741 - gmx:100792637 540.036