Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121340g00003 ATGTTCCCTTCCTCCTCTGACCTTCTTTCTGCACCTGCAGCGGGAAACAAGAACACTCCAACAATGGCTCTTACCCGCTTCATTCTTCTCTCTCTCTTTCCTTTTTTATTCTCTTCCATCTTCTTAGCTCTTCCTTTTGCTCTTGCCAATACTGACTCTTCCGATGTTCAAGCTCTTGGGGTGTTATTCAACGCGTTGAATAGTCCATCTGTGCTAACGGGTTGGAAAGTAGGTGAAGGTGATCCTTGTGGAGAGTCATGGAAAGGAATAACCTGTGATGGTTCAGCAGTTGTTTCCATTGATCTCTCAGGTTTAGGACTCAATGGAACTTTGGGATACCTGCTTTCAGACCTTATGTCACTGAGAAAACTTGACTTGAGTGACAACAAGATCCATGACACAATTCCCTATCAGTTGCCACCAAATCTTACAAGCCTGAATTTTGCTGGGAATAACTTAACCGGAAATCTTCCTTATTCCATTTCTGCCATGGCTTCACTCAATTATCTAAATGTAAGCAACAATGCACTCTCCACTCCAATTGGCGATGTTTTTGCTAGTCTTTCTGATCTTGCTACCATGGATCTTTCGTTCAATAACTTTTCGGGGGATCTACCTCCTTCACTTGCTTCATTGTCAAATCTTTCTTCTCTTTCCTTGCAGAGCAATCAATTGACTGGCAATCTTAATGCTCTTGTTGGTTTGCCTTTAGATACTTTTTCTATCCATAATTTCATATATGATGGGAATTCTTTTGACAACGGGCCTGCTCCTCCTCCGCCACCATTTACTTCTCCACCACCCAGCAGGTCTCACAACAGTCACCGTCGTTCTGGATCTGGTTCCCATAACAAAACAAGGGTTTCTGATAATGGAAGTTCTGATAACCATAATGGCTTGACCACAGGGGCTGTTATAGGAATTATTATAGGTTCAGTATTGGTGGCTGTTATTTTGCTACTTGCTCTTTTCTTCTGTATCCGAAAGCAAAAGGGAAAGGAAAAGGTCACAAGAACTTCTAGTGGGAACCATCCTCTTGGAACTACTAATGTAAATCCTCAGATGCAAGAGCAGAGGGTAAAAAGTGCAGCTGTGATTGCGGATCTCAAGCCTCCACCTGTTGAGAATGTTGTGGTCGAGAGGGCGCCTGCAAAAAGTGGATCTATAAAGCAGATGAAGTCCCCTGTAACTTCCACATCATACACAGTTGCTTCTCTCCAAAGTGCAACGAATAGTTTTAGTCAAGAAAATATTATTGGTGAAGGTTCTCTTGGTCGAGTTTACAGGGCTGAATTTCCAAATGCGAAGATCATGGCCATTAAGAAGATCGACAACTCAGCATTGTCACTACAGGAGGAAGACAATTTTCTTGAAGCTGTTTCAAATATGTCAAGGTTGCGGCATCCAAACATTGTTACACTGGCTGGATATTGTGCGGAGCATGGCCAACGCCTTCTAGTTTATGAGTACATAGGAGGCGGAAATCTACATGACATGCTACATTTTGCTGAAGATAGTAGTAAGGCTTTGTCTTGGAATGCCCGTGTACGCATAGCACTTGGCACAGCCCGGGCTTTAGAGTACTTGCACGAAGTGTGCTTGCCTTCTGTTGTACATAGAAATTTCAAATCTGCAAACATATTACTCGATGAAGAGCTCAATCCTCACCTGTCCGACTGTGGTTTAGCTGCTCTAACACCGAACACTGAGCGGCAGGTTTCAACTCAGATGGTCGGTTCGTTTGGTTATAGCGCTCCTGAGTTTGCATTATCAGGAGTATATACAGTAAAAAGTGATGTTTACAGCTTTGGAGTTGTCATGCTGGAACTATTGACTGGTCGGAAGCCGCTCGACAGTTCACGGGTTAGATCAGAGCAGTCCCTTGTGAGGTGGGCTACACCCCAGCTCCATGACATAGATGCTTTAGCCAAAATGGTTGATCCTTCTTTGAACGGCATGTATCCTGCAAAGTCGCTTTCACGCTTTGCTGATATAATTGCACTTTGTGTCCAGCCTGAACCTGAATTTCGACCTCCCATGTCGGAGGTGGTGCAAGCATTGGTACGGCTAGTGCAAAGAGCAAGTGTGGTTAAACGAAGACCAAGTGATGAATCTGGTTTTGGTCACAGGACCCCGGAACATGAGGCCATAGATATGTCTTTTTAA 2166 0.4391 MFPSSSDLLSAPAAGNKNTPTMALTRFILLSLFPFLFSSIFLALPFALANTDSSDVQALGVLFNALNSPSVLTGWKVGEGDPCGESWKGITCDGSAVVSIDLSGLGLNGTLGYLLSDLMSLRKLDLSDNKIHDTIPYQLPPNLTSLNFAGNNLTGNLPYSISAMASLNYLNVSNNALSTPIGDVFASLSDLATMDLSFNNFSGDLPPSLASLSNLSSLSLQSNQLTGNLNALVGLPLDTFSIHNFIYDGNSFDNGPAPPPPPFTSPPPSRSHNSHRRSGSGSHNKTRVSDNGSSDNHNGLTTGAVIGIIIGSVLVAVILLLALFFCIRKQKGKEKVTRTSSGNHPLGTTNVNPQMQEQRVKSAAVIADLKPPPVENVVVERAPAKSGSIKQMKSPVTSTSYTVASLQSATNSFSQENIIGEGSLGRVYRAEFPNAKIMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHPNIVTLAGYCAEHGQRLLVYEYIGGGNLHDMLHFAEDSSKALSWNARVRIALGTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGVYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPSLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRRPSDESGFGHRTPEHEAIDMSF 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121340g00003 721 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 379 490 - -
Stsc121340g00003 721 Gene3D Ribonuclease Inhibitor 52 293 IPR032675 -
Stsc121340g00003 721 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 52 263 - -
Stsc121340g00003 721 MobiDBLite consensus disorder prediction 254 268 - -
Stsc121340g00003 721 SUPERFAMILY L domain-like 54 244 - -
Stsc121340g00003 721 SUPERFAMILY Protein kinase-like (PK-like) 390 687 IPR011009 -
Stsc121340g00003 721 ProSiteProfiles Leucine-rich repeat profile. 120 141 IPR001611 GO:0005515
Stsc121340g00003 721 Gene3D Transferase(Phosphotransferase) domain 1 492 707 - -
Stsc121340g00003 721 Pfam Leucine rich repeat N-terminal domain 53 93 IPR013210 -
Stsc121340g00003 721 MobiDBLite consensus disorder prediction 253 297 - -
Stsc121340g00003 721 ProSiteProfiles Protein kinase domain profile. 413 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121340g00003 721 CDD STKc_IRAK 419 690 - -
Stsc121340g00003 721 Pfam Leucine rich repeat 120 177 IPR001611 GO:0005515
Stsc121340g00003 721 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 491 701 - -
Stsc121340g00003 721 Gene3D Phosphorylase Kinase; domain 1 376 490 - -
Stsc121340g00003 721 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 40 691 IPR046959 -
Stsc121340g00003 721 Pfam Protein kinase domain 414 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121340g00003 Stsc-Chr121340 18337 22938 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121340g00003 164 721 Strubbelig Receptor Gene Family AT4G22130 69.739 0.0 782
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Stsc121340g00003 Pkinase 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121340g00003 - - aprc:113869285 1062.75