Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121340g00001 GTTGGAGCACCACCTGAAGTGGTGGCAAGGTTAGAAGCAGCATGTGCATCTGCCATGTCAATGGCGGCAGCAGCAGCAGGAGGAGACACATCAGCTTGCTTGGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTCACAAAGTACGAGCAAGAACTTTCAAAACCCTTAAAGGAAGCCATGATCTTCCTTCAAATGATGGAGTCCCAGTTCAAGAATCTCACTATCTCTTCTTCTCGAGACCTTGGTAGCAACGAGGCAACTGATGGGAACAATGGATCATCTGAAGAAGATGTTGATCTACAAAGCCTAATAGATCCTCAGGCAGAGGACAGGGAATTGAAGGGTCAGCTTCTCCGCAAGTATAGCGGCTACCTGGGCAGTCTGAAGCAAGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCCAAAGAAGCAAGGCAACAATTACTTGAATGGTGGGGCAGACATTACAAATGGCCCTACCCTTCTGAATCACAGAAGCTGGCACTAGCAGAATCCACTGGTTTGGATCAGAAGCAGATTAACAATTGGTTTATTAATCAGAGGAAACGTCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTTGATCCATCCCATCCACACTATTACATGGATAATGTTCTTGCCAATCCATTTTCAATGGATCTCCCATCCAACACAATGCTCTAG 714 0.4636 VGAPPEVVARLEAACASAMSMAAAAAGGDTSACLGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMIFLQMMESQFKNLTISSSRDLGSNEATDGNNGSSEEDVDLQSLIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWGRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMDNVLANPFSMDLPSNTML 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121340g00001 237 CDD homeodomain 150 202 IPR001356 GO:0003677
Stsc121340g00001 237 FunFam Homeobox protein knotted-1-like 2 143 205 - -
Stsc121340g00001 237 SMART KNOX2_2 30 81 IPR005541 GO:0003677|GO:0005634
Stsc121340g00001 237 Pfam KNOX2 domain 34 80 IPR005541 GO:0003677|GO:0005634
Stsc121340g00001 237 ProSiteProfiles 'Homeobox' domain profile. 138 201 IPR001356 GO:0003677
Stsc121340g00001 237 Pfam ELK domain 118 139 IPR005539 GO:0003677
Stsc121340g00001 237 SUPERFAMILY Homeodomain-like 140 216 IPR009057 -
Stsc121340g00001 237 Gene3D - 143 205 - -
Stsc121340g00001 237 MobiDBLite consensus disorder prediction 85 105 - -
Stsc121340g00001 237 SMART ELK_2 118 139 IPR005539 GO:0003677
Stsc121340g00001 237 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Stsc121340g00001 237 ProSiteProfiles ELK domain profile. 118 138 IPR005539 GO:0003677
Stsc121340g00001 237 Pfam Homeobox KN domain 158 197 IPR008422 GO:0003677|GO:0006355
Stsc121340g00001 237 SMART HOX_1 140 205 IPR001356 GO:0003677
Stsc121340g00001 237 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 26 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121340g00001 Stsc-Chr121340 10405 14140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121340g00001 1 237 Homeobox Transcription Factor Family AT1G62360 76.033 1.58e-113 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Stsc121340g00001 KNOX2 1.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121340g00001 - - gmx:100805837 391.349