Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc121340g00001 | GTTGGAGCACCACCTGAAGTGGTGGCAAGGTTAGAAGCAGCATGTGCATCTGCCATGTCAATGGCGGCAGCAGCAGCAGGAGGAGACACATCAGCTTGCTTGGGTGAAGATCCAGCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTCACAAAGTACGAGCAAGAACTTTCAAAACCCTTAAAGGAAGCCATGATCTTCCTTCAAATGATGGAGTCCCAGTTCAAGAATCTCACTATCTCTTCTTCTCGAGACCTTGGTAGCAACGAGGCAACTGATGGGAACAATGGATCATCTGAAGAAGATGTTGATCTACAAAGCCTAATAGATCCTCAGGCAGAGGACAGGGAATTGAAGGGTCAGCTTCTCCGCAAGTATAGCGGCTACCTGGGCAGTCTGAAGCAAGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCCAAAGAAGCAAGGCAACAATTACTTGAATGGTGGGGCAGACATTACAAATGGCCCTACCCTTCTGAATCACAGAAGCTGGCACTAGCAGAATCCACTGGTTTGGATCAGAAGCAGATTAACAATTGGTTTATTAATCAGAGGAAACGTCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTTGATCCATCCCATCCACACTATTACATGGATAATGTTCTTGCCAATCCATTTTCAATGGATCTCCCATCCAACACAATGCTCTAG | 714 | 0.4636 | VGAPPEVVARLEAACASAMSMAAAAAGGDTSACLGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMIFLQMMESQFKNLTISSSRDLGSNEATDGNNGSSEEDVDLQSLIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWGRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMDNVLANPFSMDLPSNTML | 237 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc121340g00001 | 237 | CDD | homeodomain | 150 | 202 | IPR001356 | GO:0003677 | |
Stsc121340g00001 | 237 | FunFam | Homeobox protein knotted-1-like 2 | 143 | 205 | - | - | |
Stsc121340g00001 | 237 | SMART | KNOX2_2 | 30 | 81 | IPR005541 | GO:0003677|GO:0005634 | |
Stsc121340g00001 | 237 | Pfam | KNOX2 domain | 34 | 80 | IPR005541 | GO:0003677|GO:0005634 | |
Stsc121340g00001 | 237 | ProSiteProfiles | 'Homeobox' domain profile. | 138 | 201 | IPR001356 | GO:0003677 | |
Stsc121340g00001 | 237 | Pfam | ELK domain | 118 | 139 | IPR005539 | GO:0003677 | |
Stsc121340g00001 | 237 | SUPERFAMILY | Homeodomain-like | 140 | 216 | IPR009057 | - | |
Stsc121340g00001 | 237 | Gene3D | - | 143 | 205 | - | - | |
Stsc121340g00001 | 237 | MobiDBLite | consensus disorder prediction | 85 | 105 | - | - | |
Stsc121340g00001 | 237 | SMART | ELK_2 | 118 | 139 | IPR005539 | GO:0003677 | |
Stsc121340g00001 | 237 | ProSitePatterns | 'Homeobox' domain signature. | 176 | 199 | IPR017970 | GO:0000981|GO:0006355 | |
Stsc121340g00001 | 237 | ProSiteProfiles | ELK domain profile. | 118 | 138 | IPR005539 | GO:0003677 | |
Stsc121340g00001 | 237 | Pfam | Homeobox KN domain | 158 | 197 | IPR008422 | GO:0003677|GO:0006355 | |
Stsc121340g00001 | 237 | SMART | HOX_1 | 140 | 205 | IPR001356 | GO:0003677 | |
Stsc121340g00001 | 237 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 26 | 207 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc121340g00001 | Stsc-Chr121340 | 10405 | 14140 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc121340g00001 | 1 | 237 | Homeobox Transcription Factor Family | AT1G62360 | 76.033 | 1.58e-113 | 328 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-other | Stsc121340g00001 | KNOX2 | 1.6e-20 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc121340g00001 | - | - | gmx:100805837 | 391.349 |