Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121338g00004 ATGGGGATGCATCACAGGAAGCTTTTTTCAGCACAGGATACCTGCAGTGGCTTGTGTTACGATGAAGATCCTTCTTGTGTGTCAAGATCGGATTGCGACGACTGCATCAGGAAATGCTCATCTACCCTGACTCCACCACCGCCATCTTCAGATGCCTTGAATCACACCAAGCATATCATCCCTACCTTCTTGATCATCACCGTTGCCGTCGTATCCGCCGCCCTCCTTGCCCTCTTCTGCTACGCCATCTACGTCAAGTTCTACTCCCCCAGGAGCAGGTCAAGGAGGACGTTGTTCCCGTTGTCGTTTCCGTTGCGGTTACAACAATCACAGGAACGGAACGGCGACGAGTTTGTGGAGGATGAAGGAGAAGGAGGGACTATGGTGGACCACCCTATCTGGTACATCCGTACGCCGGGTCTCAACAAAAGAATCATCGAGGCCATCACGGTTTTCAAGTACAAGAAAGGCCAAGGGTTGGTTGAAGGAACGGATTGCTCTGTTTGTTTGAGCGAGTTTGAAGAAGACGACACTCTCAGGCTCTTACCCAAATGCAACCACGCTTTCCATCTCCCTTGTATTGACACGTGGCTCGCATCTCACACTAACTGTCCCATGTGTAGGGCTCCCATTGTTACCAACCCCAGAGCTTCCAGGCTTCCCTCCATGGACCACCCTGTTACTCCTCTAGAGATTCGCGGTGAGGAAGAGAACAGTTTGAGTGAGATTGTGGTGAGGAACGGATCAGAGGAACAAGTTGAAGTTGCAAGAAGGAACATGCAGCCGAGGAGATCGGTGTCTTTGGATTCTTCTTCTGCTGCCAAGATGAGCGCTGCTCTTGTTGCTGCGACTAGTGTTGGATCAGTGCAAGAATGTAATGGGAATTCAAAGAGGGTTGCTGCTGCCAAAGGTACTAGTTCATCATCATCTTCGAGTGAGCCTAGTTCGATGAAGAGGTCACGATCATTCAGTGGGAAACACGTGCTATCCTGGTACGGCCGCAACCACAAGAAGACGAATCCTCCGGTCAGAAGCTTTTGA 1041 0.5062 MGMHHRKLFSAQDTCSGLCYDEDPSCVSRSDCDDCIRKCSSTLTPPPPSSDALNHTKHIIPTFLIITVAVVSAALLALFCYAIYVKFYSPRSRSRRTLFPLSFPLRLQQSQERNGDEFVEDEGEGGTMVDHPIWYIRTPGLNKRIIEAITVFKYKKGQGLVEGTDCSVCLSEFEEDDTLRLLPKCNHAFHLPCIDTWLASHTNCPMCRAPIVTNPRASRLPSMDHPVTPLEIRGEEENSLSEIVVRNGSEEQVEVARRNMQPRRSVSLDSSSAAKMSAALVAATSVGSVQECNGNSKRVAAAKGTSSSSSSSEPSSMKRSRSFSGKHVLSWYGRNHKKTNPPVRSF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121338g00004 346 SUPERFAMILY RING/U-box 153 215 - -
Stsc121338g00004 346 FunFam RING-H2 finger protein ATL54 141 214 - -
Stsc121338g00004 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 216 IPR013083 -
Stsc121338g00004 346 MobiDBLite consensus disorder prediction 296 346 - -
Stsc121338g00004 346 ProSiteProfiles Zinc finger RING-type profile. 166 208 IPR001841 -
Stsc121338g00004 346 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 54 233 IPR044675 -
Stsc121338g00004 346 CDD RING-H2_EL5-like 165 208 - -
Stsc121338g00004 346 Pfam Ring finger domain 165 208 IPR001841 -
Stsc121338g00004 346 SMART ring_2 166 207 IPR001841 -
Stsc121338g00004 346 MobiDBLite consensus disorder prediction 296 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121338g00004 Stsc-Chr121338 18950 19990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121338g00004 66 218 C3H Transcription Factor Family AT1G72220 48.750 3.15e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121338g00004 - - aip:107631077 494.582