Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121337g00001 ATGATGCTCGGGGAGCACCATCGTGCAAATCCGACGGTCCACGTGCCACCGTGGCCGATCCTCGATGATCAAACGGCTGATATCTACTCTCCTTACTCCGTAACCGAAGCCAATGCTGCCGCAGCCGATTACTCTCCTTACTATCTACAAGAAGCTCTCTCCGCCCTGCAGCGATACCTTCCGTCGAATGATGCTGCCGGAGACGGCGGTGATTCCGACGGCGAGGCTCAGGCTGACGCGCCGGTTGACGCGTACTCGTGTGACCAGTTTCGCATGTACGAGTTCAAAGTGAGGCGATGTGCGCGCGGGAGGTCGCATGACTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGTCGTGACCCGCGGAAGTTTCACTACTCCGGCACGGCGTGTCCCGACTTCCGCAAGGGAAACTGCAAGAAAGGAGACGCGTGCGAGTACGCGCACGGCGTCTTCGAGTGCTGGCTTCACCCGGCGCGGTACCGTACTCAGCCGTGCAAGGACGGGACCAGCTGCCGCCGCCGCGTGTGTTTCTTCGCGCACACGCCGGAGCAGCTTCGCGTTCTTCCGCAGCATAGTCCGCGAAGCGTGGATTCGTACGACGGATCTCCGCTAAGGCAAGTGTCGATGCCGTTCGTGTCGTCGCCGACTTCAGTTTCGCCGCCGGTTGGTTCTCCGGTGGATTCTCCACCGATGTCGCCGATGATGAGGTCTCTTGGCTCAAGCAACATATCTGATATGGTTGCTTCACTGAGAAACTTGCAGCTTGGGAAGGTGAAATCAATGCCTAATAGTAACAGAAACGTTACGGTTGGGTCTCCGGGTTTCGGATCTCCTCGCGGATCCGTGATTCGACCCGGATTCTGCAGCCTGCCAGCAACTCCAACGCAGGTACCAGGTCGGGTCGGATCGAATTGCTTCGAGTTGTGGGAACAGAGTTTTGAGGAGGAGCCAGTTATGGAGAGGGTGGAATCTGGAAGGGACATAAGGGCGAAGATGTTTGAGAAGCTGAGTAAGGAGAATTCTCTGGATGGGTCTGGTTCTGGTTCGGGTCACCAATCGGGTGGAATCCCGGATCTTGGGTGGGTCTCTGAGCTTGTTAAGTGA 1119 0.5782 MMLGEHHRANPTVHVPPWPILDDQTADIYSPYSVTEANAAAADYSPYYLQEALSALQRYLPSNDAAGDGGDSDGEAQADAPVDAYSCDQFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQHSPRSVDSYDGSPLRQVSMPFVSSPTSVSPPVGSPVDSPPMSPMMRSLGSSNISDMVASLRNLQLGKVKSMPNSNRNVTVGSPGFGSPRGSVIRPGFCSLPATPTQVPGRVGSNCFELWEQSFEEEPVMERVESGRDIRAKMFEKLSKENSLDGSGSGSGHQSGGIPDLGWVSELVK 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121337g00001 372 FunFam Zinc finger CCCH domain-containing protein 66 87 155 - -
Stsc121337g00001 372 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Stsc121337g00001 372 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Stsc121337g00001 372 MobiDBLite consensus disorder prediction 344 364 - -
Stsc121337g00001 372 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Stsc121337g00001 372 Gene3D - 128 193 - -
Stsc121337g00001 372 PANTHER UNKEMPT FAMILY MEMBER 50 372 IPR045234 -
Stsc121337g00001 372 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121337g00001 Stsc-Chr121337 7045 8929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121337g00001 85 269 C2H2 Transcription Factor Family AT5G12850 51.256 9.28e-58 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc121337g00001 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121337g00001 - - aprc:113867365 571.237