Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121336g00001 ATGAAGCTTTCAACATCAGGGTTGCCTCAGCAGGGACAACATGAAGGAGGGGAGAAGAAGTGCTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCTTTGGTGTCCCTACCATCTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATATTGATGGCCACATACCGAATTACCCGAGTTTGCCGCCCCAGTTGATTTGCCAACTTCACAATGTTACGATGCATGCAGATGTTGAAACGGATGAAGTTTATGCCCAAATGACACTGCAGCCTTTAACTCCGCAAGAGCAGAAGGATACGTTTCTTCCCATGGAATTGGGAGTTCCAAGTAAGCAGCCCTCGAATTATTTTTGCAAGACCTTAACGGCTAGTGACACCAGCACACATGGAGGGTTTTCCGTTCCACGTCGTGCAGCTGAGAAAGTTTTCCCTCCGCTGGATTTCTCACAGCAACCTCCTGCGCAAGAACTAATTGCTAGGGATCTCCATGACGTTGAGTGGAAATTTCGTCATATTTTTAGGGGACAGCCAAAGAGGCACCTTCTTACTACCGGCTGGAGTGTATTTGTCAGTGCCAAAAGACTTGTGGCAGGAGATTCTGTGCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCTAATAGACCACAGACTGTAATGCCTTCGTCAGTTCTATCCAGTGACAGCATGCATATTGGGCTTCTGGCAGCTGCCGCCCATGCTGCAGCAACTAATAGTTGTTTCACAGTGTTCTATAATCCAAGG 783 0.4751 MKLSTSGLPQQGQHEGGEKKCLNSELWHACAGPLVSLPSAGTRVVYFPQGHIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGVPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPR 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121336g00001 261 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Stsc121336g00001 261 CDD B3_DNA 117 218 IPR003340 GO:0003677
Stsc121336g00001 261 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Stsc121336g00001 261 SUPERFAMILY DNA-binding pseudobarrel domain 102 247 IPR015300 -
Stsc121336g00001 261 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 261 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc121336g00001 261 SMART B3_2 118 220 IPR003340 GO:0003677
Stsc121336g00001 261 Gene3D - 116 219 IPR015300 -
Stsc121336g00001 261 FunFam Auxin response factor 116 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121336g00001 Stsc-Chr121336 8 2770 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121336g00001 1 261 B3 DNA Binding Superfamily AT1G30330 83.824 1.14e-156 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc121336g00001 B3 8.1e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121336g00001 - - adu:107473768 520.005