Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121333g00001 ATGGGCTCCCCCGCTGAAGTCCCCTCTCCTGATGCCGCACCCGCACCATCTCCTCCTCCTCCGCCTCCGCCGCCGACGACTCGGCCTTCACCGTTCCCCGGACGGGAAGACTGCTGGACCGAGGAGGCCACCTCCACCCTCATCGACGCATGGGGTTCCCGCTACCTCTCCCTCAGCCGCGGCAACCTTCGCCAAAATCACTGGCAGGAAGTCGCCGCCGCCGTCAACGCCGCCCACGGCCACGACCCGAAACACCGCCGCACCGATGTCCAGTGCAAGAACCGCATCGACACGCTCAAAAAGAAATACAAGGTCGAGAGAGCTAGGGTTTCCGAATCGACCGCCGGCGACGACGACGGCAGCGGTAGCGTGTATTCCGGCACATGGACTTTCTTCCACCGCATCGATTCCCTCATCGGAGACACTTATCCTTTGAAAAAACCGTCCCCGCCGGTGAAATCCTCCCCTCGCCTTAAATCCCCTCCGGCGGCGAAGCCTTCGCCGCCGCCGTGGACGGTGACTCCGGTAGGTCCCCGATCCGGAACGAAGAAGCGTCCGGCGGCGATGAGGTCCGACGAGTCTTACTTTCGGCGGAAGTTCTCGGCTTTTGCGGCCGCGGCGGTGGCGGCGGCTGCGGCGGAAAGCTCGGATTCGAAGGGGAGCAGTGAGAAGAGGAGAAGGGTAACGAAAAACGATGAGGAATGGGAAATTGGGTACAGAGAATTGGCACATGCTATTGAGAAAATTGGTGAGATTTACGAGAGAGTTGAAGCTGCGAAGAGGAAGCAAATGGTTGAGTTGGAGAAGCAACGGATGCAGTTTGCTAAGGATTTGGAGTGTCAGAGGTTGAAGCTTTTCATGGAGACTCAGCTTCACATTCACAAGATCAATAATCACTCTTCTAATGATGCCGCTGATAGTTTCTCATAG 930 0.5817 MGSPAEVPSPDAAPAPSPPPPPPPPTTRPSPFPGREDCWTEEATSTLIDAWGSRYLSLSRGNLRQNHWQEVAAAVNAAHGHDPKHRRTDVQCKNRIDTLKKKYKVERARVSESTAGDDDGSGSVYSGTWTFFHRIDSLIGDTYPLKKPSPPVKSSPRLKSPPAAKPSPPPWTVTPVGPRSGTKKRPAAMRSDESYFRRKFSAFAAAAVAAAAAESSDSKGSSEKRRRVTKNDEEWEIGYRELAHAIEKIGEIYERVEAAKRKQMVELEKQRMQFAKDLECQRLKLFMETQLHIHKINNHSSNDAADSFS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121333g00001 309 MobiDBLite consensus disorder prediction 1 37 - -
Stsc121333g00001 309 Pfam Myb/SANT-like DNA-binding domain 36 138 IPR044822 -
Stsc121333g00001 309 MobiDBLite consensus disorder prediction 212 231 - -
Stsc121333g00001 309 FunFam trihelix transcription factor ASIL2 39 105 - -
Stsc121333g00001 309 PRINTS Proline rich extensin signature 144 160 - -
Stsc121333g00001 309 PRINTS Proline rich extensin signature 2 14 - -
Stsc121333g00001 309 PRINTS Proline rich extensin signature 17 33 - -
Stsc121333g00001 309 PRINTS Proline rich extensin signature 165 182 - -
Stsc121333g00001 309 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 19 300 IPR044823 -
Stsc121333g00001 309 Gene3D - 39 105 - -
Stsc121333g00001 309 MobiDBLite consensus disorder prediction 9 31 - -
Stsc121333g00001 309 MobiDBLite consensus disorder prediction 149 175 - -
Stsc121333g00001 309 MobiDBLite consensus disorder prediction 143 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121333g00001 Stsc-Chr121333 6649 9224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121333g00001 239 299 Trihelix Transcription Factor Family AT3G14180 49.180 2.38e-14 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc121333g00001 Myb_DNA-bind_4 1e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121333g00001 - - gmx:100811154 308.145