Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121330g00005 ATGGTTAGCGAAGACCTAAAACGAAGCCCCGTAAACCAACCGAACCCTGCAACTGACGGAAACGCCCAAACCCAAAACCATGACGGTGGCGTTTTCAGCCCACGATTCAAATCGGCGGCAGCTTTGGCCGGCTGGGACGAAGAGGCACTGCTTCTCGCTAGCCTCGTCGTCGAAGACACACCCGATAGAGATTTCAAGCACAAGAAGCGCTCTGTCTTCAACTCCAAGACTCCACCCACCAATTCAAGAAGAGCACAGAGCTCTTCAGAATCGATCCGAGTGGCTGTTCTTGATCTTGACGAAGAAGAAGACACTGTAAAAAAAGATAGCGAGAAAAATGCCAAAGAAAAGAAGGTTACTGTAAACGAAGAGAGTAAAGAAGGAGGGAATGAATCCGGTGTTTCTTCCTCCGGTGCTGCACTTCCCTGCATTGATAAGCTCAGGGACGAGCTTTCTTGCGCGATCTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTTTGTAAGAAGTGCCTTCGGTCTGCTGCAGACAAATGTGGCAAAAAATGCCCAAAATGCAGGCAATTAATAGGCATCGGAAGATCATGCACTGTGAATACTGTTCTCTGGAATACAATACAGCTTCTGTTTCCCCAAGAAGTCGAAGCAAGGAAAGCCGCCGGCGCCATAAATAGCCGTCCACAATCTAAGTGCCCGAGTCCAGAAACAGCATTTTACAACAATCTAAGGAATGGTGACAGCACACCAACCAGAGGTGGTGTAAGTACAAGGCGAAGCAGCGGCAGGGCTGCCATGGTAACTGATCAGGGAGCTGCAGTGGCATTAAGGATGGTAAGAGAGAATGCTGGAGTGGGACTGCTACCGACCAGGGCACGGCTTCATGATGTGAGACCAAGAAGAGAGATTCCTCCTGCTTCACAAAATGAGGATGCAGCATTGGCTCTGAGGCTGCAGAGAGAGGAGTTTATTCAGGCCTTTAGGGGAACACAGGAACAACACCATTCAAGCAGATCCTCATCTGTGAATTCATCAGCTAGAGAAAATTTGAGGGCAATGGCATCTAGAGCCATGAATCTTCGCATTAGAGATCGAAGATTGTGA 1116 0.4866 MVSEDLKRSPVNQPNPATDGNAQTQNHDGGVFSPRFKSAAALAGWDEEALLLASLVVEDTPDRDFKHKKRSVFNSKTPPTNSRRAQSSSESIRVAVLDLDEEEDTVKKDSEKNAKEKKVTVNEESKEGGNESGVSSSGAALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKKCPKCRQLIGIGRSCTVNTVLWNTIQLLFPQEVEARKAAGAINSRPQSKCPSPETAFYNNLRNGDSTPTRGGVSTRRSSGRAAMVTDQGAAVALRMVRENAGVGLLPTRARLHDVRPRREIPPASQNEDAALALRLQREEFIQAFRGTQEQHHSSRSSSVNSSARENLRAMASRAMNLRIRDRRL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121330g00005 371 Pfam Zinc finger, C3HC4 type (RING finger) 153 191 IPR018957 GO:0046872
Stsc121330g00005 371 ProSitePatterns Zinc finger RING-type signature. 168 177 IPR017907 -
Stsc121330g00005 371 MobiDBLite consensus disorder prediction 95 125 - -
Stsc121330g00005 371 SMART ring_2 153 191 IPR001841 -
Stsc121330g00005 371 MobiDBLite consensus disorder prediction 64 138 - -
Stsc121330g00005 371 PANTHER UNCHARACTERIZED 303 363 - -
Stsc121330g00005 371 MobiDBLite consensus disorder prediction 74 93 - -
Stsc121330g00005 371 Coils Coil 107 127 - -
Stsc121330g00005 371 MobiDBLite consensus disorder prediction 333 352 - -
Stsc121330g00005 371 MobiDBLite consensus disorder prediction 1 31 - -
Stsc121330g00005 371 MobiDBLite consensus disorder prediction 1 33 - -
Stsc121330g00005 371 MobiDBLite consensus disorder prediction 248 267 - -
Stsc121330g00005 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 222 IPR013083 -
Stsc121330g00005 371 MobiDBLite consensus disorder prediction 332 352 - -
Stsc121330g00005 371 ProSiteProfiles Zinc finger RING-type profile. 153 192 IPR001841 -
Stsc121330g00005 371 SUPERFAMILY RING/U-box 145 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121330g00005 Stsc-Chr121330 21502 23528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121330g00005 72 213 C2H2 Transcription Factor Family AT5G39550 31.724 3.16e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121330g00005 - - qsa:O6P43_004759 403.29