Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121328g00001 ATGGGCAAAAAGAAACCAAAGGACCCTCCCCAATCCGACTTAGCTTCGCCCCCTCCCGCTGCCGGCATTTTCTCCTCGCTCTTCGCCGCCGCGCCGCAAGCAAACACCCCCCTCGCTTCCTTATTCTCCGACGACAACCCCTTTCGGAGAAAGCCCGCTCAACTTTCTCAGGAATCAACCCAACAAGCTCAAATCCCTAACAATGTCGGATCCGCGAACCACGACACCGGCGAGGAGCAGAAGAGGAAGAGAAAAACCTTAGAGGAGAAGCCCTCCGCCGATTCCGCAATCGAAGCTTCGGAGAAGAAGGGGAAGTACCACGAGTCAATTGAAGAGGCCAAAGGCTCTGACTTGGCCATCGAAAAGAACGATGAGGGGAAGGACAAGAAGAAGAAGAAGAGGAAAAGAGAGGAGCTTGAGAAGGAGTGGGAGGAGAGGAAGTACGGTTCGGTGGTGGAGGAAGAAAAAGAAGCGTCTTTGTTGGAGAACGGAAAAGTTGGCGGCAAGAGGAAGTTGCTGCATAACCCTGCTGATATGATGGTCTCGAAAGAAGGGTTTGATGATGAGGACAAGCTCTTGAGAACGGTCTTCGTTGGGAATTTGCCTCTCAAGGTGAAGAAGAAGACTCTGCTCAAAGAGTTCAAGAAGTTCGGTGAGGTTGAATCCGTGAGGATTCGTTCTGTTCCGATACAAGATACTAAAAAGCCTAGGAAGGGTGCTATCCTTGCGAAGAAAATCAATGATGCTGCTGATAGTGTTCATGCCTACATTGTTTTCAAAACTGAAGAATCTGCTCAGGCATCTTTGTCCCACAACATGGCAGTGGTTGAAGGGAATCACATTCGTGTTGATAGGGCATGTCCTCCCCGCAAGAAACTTAAAGGGGAGAGTACTCCACTTTATGATAACAAGAGAACTTTGTTTGTGGGTAACCTTCCATTTGATGTGAAGGATGAAGAACTATATCAGTTATTTTGTAGCATACCTAATCTGGGAGCCAGTGTAGAAGCTGTAAGAGTTGTTAGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTGCTGTATAAAACAAAGGAAGCTGCTAATTCTGTACTCAAGAAACGGAACTTGAAGCTTCGAGACCGACAATTACGACTTAGTCATGCGAAAGCTGATTCCACCCCGTCGAAAAGGCCAAACCCATCCACCCCATCGAAAAGGCCAAACCGATCACCAGCAGAAGCTCCTGGCACCCCAGCCAAGAGAAAGCATCTGGCTACAGCGTCTCCTTCAAGCAGCATCAACAGGTCAAACAAAAAATCCAATGCATCCTACCAGGGTCTGCGTGCAACAAAATCTGATTTCAAGAAGAAAGCTCCTGGAGTAGAAAAACCAAAACAACGCTTGGAGAAAAGACCATCAGTTGCCGCCAGAAAGGCCAAAGCAAAAGTGCTCAAGGAAAGCGGTTCATCAAAACAAGCTGGGATGAAACGCAAGCTTGATAGTCGTACTCCAGATAGCTCCTTCAGAGCTAAGAAGGTGAAGAAGAATAGGTAG 1542 0.4767 MGKKKPKDPPQSDLASPPPAAGIFSSLFAAAPQANTPLASLFSDDNPFRRKPAQLSQESTQQAQIPNNVGSANHDTGEEQKRKRKTLEEKPSADSAIEASEKKGKYHESIEEAKGSDLAIEKNDEGKDKKKKKRKREELEKEWEERKYGSVVEEEKEASLLENGKVGGKRKLLHNPADMMVSKEGFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEESAQASLSHNMAVVEGNHIRVDRACPPRKKLKGESTPLYDNKRTLFVGNLPFDVKDEELYQLFCSIPNLGASVEAVRVVRDPHLNVGKGIAYVLYKTKEAANSVLKKRNLKLRDRQLRLSHAKADSTPSKRPNPSTPSKRPNRSPAEAPGTPAKRKHLATASPSSSINRSNKKSNASYQGLRATKSDFKKKAPGVEKPKQRLEKRPSVAARKAKAKVLKESGSSKQAGMKRKLDSRTPDSSFRAKKVKKNR 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121328g00001 513 SUPERFAMILY RNA-binding domain, RBD 186 294 IPR035979 GO:0003676
Stsc121328g00001 513 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 285 453 - -
Stsc121328g00001 513 MobiDBLite consensus disorder prediction 50 74 - -
Stsc121328g00001 513 MobiDBLite consensus disorder prediction 420 444 - -
Stsc121328g00001 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 288 IPR000504 GO:0003723
Stsc121328g00001 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 238 IPR000504 GO:0003723
Stsc121328g00001 513 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 379 IPR000504 GO:0003723
Stsc121328g00001 513 MobiDBLite consensus disorder prediction 373 513 - -
Stsc121328g00001 513 MobiDBLite consensus disorder prediction 1 140 - -
Stsc121328g00001 513 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 386 IPR000504 GO:0003723
Stsc121328g00001 513 MobiDBLite consensus disorder prediction 446 507 - -
Stsc121328g00001 513 MobiDBLite consensus disorder prediction 373 387 - -
Stsc121328g00001 513 SMART rrm1_1 306 382 IPR000504 GO:0003723
Stsc121328g00001 513 SMART rrm1_1 195 284 IPR000504 GO:0003723
Stsc121328g00001 513 CDD RRM1_RBM34 194 284 - -
Stsc121328g00001 513 Coils Coil 122 142 - -
Stsc121328g00001 513 CDD RRM2_RBM34 306 382 IPR034221 -
Stsc121328g00001 513 Gene3D - 295 393 IPR012677 -
Stsc121328g00001 513 Gene3D - 190 293 IPR012677 -
Stsc121328g00001 513 MobiDBLite consensus disorder prediction 75 140 - -
Stsc121328g00001 513 SUPERFAMILY RNA-binding domain, RBD 301 406 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121328g00001 Stsc-Chr121328 4551 7852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121328g00001 306 383 Eukaryotic Initiation Factors Gene Family AT2G23350 32.911 2.49e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121328g00001 K14837 - gmx:100784494 611.683