Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121327g00003 ATGATCATAACAACTAGGGATGAACATATTCTTAAAGGTTATGGAGTAGATGCAATTCACAAGGTTTCATTGTTGGACTCCCATGATGCTTTGGAACTTTTTTTCAGGAAGGCTTTCAGAAGTGACCGTCCAAGTAGCAGCACTTGTATGGAGTTGACTCCCAGCATATTGGAATATGCTCAAGGTGTTCCATTAGCAATCAAAGTAGTGGGTTCTTTCTTATACAACCGAGATGCTTCCCAATGGAGAGATTCTTTAGGAAGATTGAAGAAATATCCAGACAAAAAGGAGGTTACAGGTGTGCTTCAAATAAGTTTTGAGCCATTGCGAAAAGAAGAAAGAGAAATATTTTTGCACATTGCTTGCTTTTTCAGGGGGCAGAGGGAAGAGTATGTAAAGCGAATTCTAGATGTTTGTGGACTACACCCTCAAATTGGAATTCCAGTTCTCAAGGAGAGATCACTCATAGCCATTAAGAACCAAGAGATTCATATGCATGACATGTTACAAGAATTGGGTAAGAAACTTGTTCGGGAAAAATATCCTGAAGAGCCAGCATTGTGGAGCAGAGTATGGCTTTGTGGTGATTTTGAAAGTGCTTTGATGTCAGTCGAGAAGGGAACAAACAATGTTAAAGCCATGGTCTTAGATCAGAAAAAGTATATGCCCGAGTCCAGGCAATTGAGGATCGAAGGATTGTCAAGATTTAAGGATCTTAAATTGCTTATATTATACCATAAAAACTTTTTAGGAAGCCTTGATTTTCTTTCCTCAAATCTACAATATCTTGGTTGGCATGGCTATCCTTTCCCTTCTTTGCACACCCCCACATCCAACAGAAACCTATTCAAATGGCCACAACTTTCAAGATTACTATTTATCATGCAATTTGGTGAACAAAAAACAAAAATCAGAGAACTTACACTTTATTTCACCAAGTTTACACTTTATATTTGCTTAATAGAGAAATCAGTTATATTGGACAAAGTAAACCCAGATCTAACTTGA 1008 0.376 MIITTRDEHILKGYGVDAIHKVSLLDSHDALELFFRKAFRSDRPSSSTCMELTPSILEYAQGVPLAIKVVGSFLYNRDASQWRDSLGRLKKYPDKKEVTGVLQISFEPLRKEEREIFLHIACFFRGQREEYVKRILDVCGLHPQIGIPVLKERSLIAIKNQEIHMHDMLQELGKKLVREKYPEEPALWSRVWLCGDFESALMSVEKGTNNVKAMVLDQKKYMPESRQLRIEGLSRFKDLKLLILYHKNFLGSLDFLSSNLQYLGWHGYPFPSLHTPTSNRNLFKWPQLSRLLFIMQFGEQKTKIRELTLYFTKFTLYICLIEKSVILDKVNPDLT 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121327g00003 335 Gene3D - 24 110 IPR042197 -
Stsc121327g00003 335 SUPERFAMILY "Winged helix" DNA-binding domain 97 189 IPR036390 -
Stsc121327g00003 335 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 2 284 IPR044974 GO:0006952
Stsc121327g00003 335 Pfam NB-ARC domain 1 91 IPR002182 GO:0043531
Stsc121327g00003 335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 120 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121327g00003 Stsc-Chr121327 11215 12503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121327g00003 1 270 WRKY Transcription Factor Family AT5G45050 27.148 4.48e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121327g00003 - - ccaj:109817829 333.569