Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121324g00001 ATGGCGCTAAAAGCAGCGGTGTATCCCCAGACACAAGACCCATCATTTTCCTATGCACTCAATTACTACCATCATCATCATCAAGACCCAACACTAGCACTAGAAACTAATTACCCTTCTTCTTATTATGTTCCAGAATTATGTAACAACAACACTAACACTTGTTCATCACCACCACCAGAATTATTGGCCACTGATCTCAGCAATAACACTTGTCGTCCCAATCCCAAGAGAAGAAGAGCGAAGAGCAGGAAGAATAAAGAACAGATAGAGAACCAGAGAATGACTCACATTGCTGTGGAACGCAACAGAAGGAAGCAGATGAATCACTATCTCTCTGTTCTTCGCTCCTTAATGCCAGATTCTTATGTCCAAAGGGGTGACCAAGCTTCAATAATAGGAGGAGCTATTAACTTCGTTAAGGAGCTTGAACAGAAGCTTCAGTTCCTTGGAGCTACTCATCATCAAGAAGGTGATGAACACAACAACAACACACCCTTTTCTGAGTTCTTCACATTCCCACAGTACACAACAACAACAACAACAACATCAAGCAGCAGCAATAATAATGGAGGAGAAGGATGTGACAAATCATCAACAACAGTGGTGGGATCAGGTGGTGCTGACATAGAAGTGACAATGGTGGAGAGCCATGCAAATGTGAAGATAAGATCAAAGAAGAAGCCAAAGCAGCTGTTGAAGATGGTCTCAGCTTTGCACACAATGAGGCTTACAATCTTACACCTTAATGTCACCACCACCATCAATCACTTTGTTCTCTACTCTCTCAGTCTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTGGATGATATTGCTGCAGCTGTATACCAGCTTATGAATAGCATTCAACAACAAGCACCAACGATCTTCAACTAA 900 0.42 MALKAAVYPQTQDPSFSYALNYYHHHHQDPTLALETNYPSSYYVPELCNNNTNTCSSPPPELLATDLSNNTCRPNPKRRRAKSRKNKEQIENQRMTHIAVERNRRKQMNHYLSVLRSLMPDSYVQRGDQASIIGGAINFVKELEQKLQFLGATHHQEGDEHNNNTPFSEFFTFPQYTTTTTTTSSSSNNNGGEGCDKSSTTVVGSGGADIEVTMVESHANVKIRSKKKPKQLLKMVSALHTMRLTILHLNVTTTINHFVLYSLSLKVEDDCKLGSVDDIAAAVYQLMNSIQQQAPTIFN 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121324g00001 299 PANTHER MAX DIMERIZATION, MAD 27 293 - -
Stsc121324g00001 299 MobiDBLite consensus disorder prediction 66 90 - -
Stsc121324g00001 299 Gene3D - 78 160 IPR036638 GO:0046983
Stsc121324g00001 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 92 157 IPR036638 GO:0046983
Stsc121324g00001 299 MobiDBLite consensus disorder prediction 178 200 - -
Stsc121324g00001 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 143 IPR011598 GO:0046983
Stsc121324g00001 299 SMART finulus 98 149 IPR011598 GO:0046983
Stsc121324g00001 299 Pfam Helix-loop-helix DNA-binding domain 93 144 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121324g00001 Stsc-Chr121324 16470 18681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121324g00001 52 267 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 50.877 1.22e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc121324g00001 HLH 5.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121324g00001 - - adu:107465443 382.874