Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121322g00003 ATGGATCAGGCTGTGGGGATAATCTGGGATGCTGGCAACCGTTTATACGGTTGCATGAAAGAGCAGGCTGATTACATTGTGAAGCAGGAGGAGAACCTAACAAAATTAAAAGAAAAGATGGAACATCTTGAAAACATATGCAGAGATGTGGAGATAAGAATTGAGAACGCTGAGATCCACGGAGAGGGGCGTATAAAACATCAAGTCAATGCTTGGCTCAACCGTGTTCGGACTCTCCAACTGGAATATATGTCACAGGAAATAGAGGAAATTAAAGAACCTCCAGAACCCAACAAAAAATGTGTCATCTGTTTTCGACAAAGTAATTGTATGTCAAGATACAAGTTTGGTAAAAATGTCGTTAAGATGATCCCTAGGGTTGATGAACTTTTGAGTAAAGGAGAAGGTTACGCACACGGTGTTGAAATCACTCACCACTCATCACTGAAGTCAATCTATGAGATTCCTAACATAGAGACTGTGGGCTTGGATTCCATGGTTAACAGAGTTTGGAACACCCTTCAAGATGAAAATGTTGGCATCATTGGAATATATGGCATGGGTGGGGTGGGAAAAACCACTCTCGTGAAGAGAGTTTACAACGAGTTTGGAAACCGCAAGCACGAGTTTGATCTTGTGTTGTGGATTACCATTGCCAAGGATTGTGACAATGCCAAAGTGATGAATGATATTCGAAACAGGTTAGGGGTGAAGGATGACTCTTGGAACAGAAGCAGTGAACATGAGAAGGTGGCCAAAATCTACCAAGTCCTGAGGCAGAGGAGGTTTGTGTTGATGCTGGATGATCTATGGGGGAAATTGGACCTTCAAGAGGTGGGAGTGCCGCATCCGAAGAAGGCCGGTTGTCGATCGAAAGTGATGTTCACGACAAGGGAAGAGGATGTGTGTGATAAGATGCAAGCAGATAAGAAGTTCAAAGTGGAATGTCTGAGTGAAGAGGAGGCATTTGCCTTGTTCTGCAAGAAAGTAGGTGAAGGGACTTTAAACAGCAATGTGGAGATTCCAAGGCAGGCAAAGAAGATGGCTAAAGAGTGTAGAGGGTTGCCACTAGCACTTGTCACTGTTGGGAGTGCCATGTCTGGAGTAAGGAATGTTGTGTCTTGGAGGCAAGCCAAAAATGAGTTGAGGGGGAATCCATGGATTGCTTCTGATTTGGAGAAGCATGTGTTCGGTGTTCTCAAGTTTAGCTATGACAGGCTGCCAGATGAAGCACACAAGAATTGCTTCCTGTATTGCGCTCTGTATCCAGAAGACTATGAGATCAGAGTTGAAGATCTGATTGATAGATGGATTGGAGAAGGGTTTCTTGGCAAGACTAGTAAGAAGAGCATATATGATATGCGTGAAGAAGGGCATTCTATCATTGAGAAATTGAAGCTTTCTTGTTTGGTTGAGGATGTTATGGCTGATATCTTCCAATGGTGGCCTAGGATCAAGATGCACGATGTCATGCGAGATATGGCGATATGGATAGCCTGTGATCAAGATGCTATCAGAGACAAGGTGGTGGTGGAGGACCATGCTCTCCGTCTACATACTGAAAAGATGGAACTTGTTGAGAAGATTTCTGTTATAAGAGCCGCCGGAATGCGCCAGCTACCGCCTTGTCCCAATGTAGTAACCCTGTGTTTGCAAAATCTTGAGGACAATGTTGATTTCTCAAATCTCCAAATCATGTCAAAGTTGAAGGTGTTGGATTTATCAAACAATAGGCACATCAAACACCTTCCTAGTGAAATAGGCATGGTGATCAACTTGGAATTCCTTAACCTCTCACTCTCACAAGTATCCACACAGATTCAGTTGCCAATTGAATTGAAGAATTTGGAGAAACTGAAGGTCCTTCTCATGAAAGATACTTTCACTTCATCAAACATTATTAAAGTCTTGGAAAGCCTTATGCAATTGCAGATTCTAAGACTTGGATATGGAGGGAGGGTAGGAGGAAGCATGTCTTTCAGTGAGGCAGGTAATATTCAAGAAGGAATCTTGATAGACAAATTGGAAAGCTTACCTCAATTGGAAGAACTATGCATCAATTTGAAAACCATCAAAGGAGTCCAAAAATTGCTTAAATCCACCAAGTTGCAAGGTTGCTTGAGATATGTTTGGCTCAGTTTCATTGATGAGCCAATTGAGATGGCTACAATGTTGACATCTTGGTCTAAAATGAAGCACTTGGAGCTTATAACTCTGCAATATTTGTACAACATCAAGGAAGTTCCATCCAACAATTACACTTGTCACTTCGAGGTGCTTCGCGAGGTAGAGATCAACGGATGTGATTCAATAACTCACTTGACATGGCTGAAGCATGCTGAATTGCTTGAGATTCTTCAGGTTAGAAATTGCAACTCAATTGTAGAGTTAGTGAAGGGAGGTCAAGGTGAAAGTGTGGGCATGGATTTGTTTCCACATCTTAGATTTCTTAAACTATCTTTTCTGGTGAGGCTGAAGAGCATATACAATGGAGCATTGCCTTTTCATTCATTAAAATTCATCATGGTTGTTGGATGCGATCATTTGCGGAAGCTGCCTCTGAATTCCAGCTCTAAGGACACATTGATTCAAATAAGTGGTGAACAAGAATGGTGGAACAATTTAGAGTGGGATGATCCATCCACTGGAGACTCACTTGATTCCAAATTCAAATCATTTGTTCGTGTTTGA 2691 0.4203 MDQAVGIIWDAGNRLYGCMKEQADYIVKQEENLTKLKEKMEHLENICRDVEIRIENAEIHGEGRIKHQVNAWLNRVRTLQLEYMSQEIEEIKEPPEPNKKCVICFRQSNCMSRYKFGKNVVKMIPRVDELLSKGEGYAHGVEITHHSSLKSIYEIPNIETVGLDSMVNRVWNTLQDENVGIIGIYGMGGVGKTTLVKRVYNEFGNRKHEFDLVLWITIAKDCDNAKVMNDIRNRLGVKDDSWNRSSEHEKVAKIYQVLRQRRFVLMLDDLWGKLDLQEVGVPHPKKAGCRSKVMFTTREEDVCDKMQADKKFKVECLSEEEAFALFCKKVGEGTLNSNVEIPRQAKKMAKECRGLPLALVTVGSAMSGVRNVVSWRQAKNELRGNPWIASDLEKHVFGVLKFSYDRLPDEAHKNCFLYCALYPEDYEIRVEDLIDRWIGEGFLGKTSKKSIYDMREEGHSIIEKLKLSCLVEDVMADIFQWWPRIKMHDVMRDMAIWIACDQDAIRDKVVVEDHALRLHTEKMELVEKISVIRAAGMRQLPPCPNVVTLCLQNLEDNVDFSNLQIMSKLKVLDLSNNRHIKHLPSEIGMVINLEFLNLSLSQVSTQIQLPIELKNLEKLKVLLMKDTFTSSNIIKVLESLMQLQILRLGYGGRVGGSMSFSEAGNIQEGILIDKLESLPQLEELCINLKTIKGVQKLLKSTKLQGCLRYVWLSFIDEPIEMATMLTSWSKMKHLELITLQYLYNIKEVPSNNYTCHFEVLREVEINGCDSITHLTWLKHAELLEILQVRNCNSIVELVKGGQGESVGMDLFPHLRFLKLSFLVRLKSIYNGALPFHSLKFIMVVGCDHLRKLPLNSSSKDTLIQISGEQEWWNNLEWDDPSTGDSLDSKFKSFVRV 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121322g00003 896 Coils Coil 19 60 - -
Stsc121322g00003 896 PRINTS Disease resistance protein signature 257 271 - -
Stsc121322g00003 896 PRINTS Disease resistance protein signature 181 196 - -
Stsc121322g00003 896 PRINTS Disease resistance protein signature 352 366 - -
Stsc121322g00003 896 PRINTS Disease resistance protein signature 564 580 - -
Stsc121322g00003 896 Gene3D Ribonuclease Inhibitor 504 655 IPR032675 -
Stsc121322g00003 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 419 IPR027417 -
Stsc121322g00003 896 Gene3D - 404 496 IPR036388 -
Stsc121322g00003 896 Gene3D - 317 403 IPR042197 -
Stsc121322g00003 896 Gene3D Ribonuclease Inhibitor 665 871 IPR032675 -
Stsc121322g00003 896 Gene3D - 142 316 IPR027417 -
Stsc121322g00003 896 ProSiteProfiles Leucine-rich repeat profile. 568 590 IPR001611 GO:0005515
Stsc121322g00003 896 FunFam Probable disease resistance protein At1g63360 404 497 - -
Stsc121322g00003 896 FunFam Probable disease resistance protein At5g66910 316 403 - -
Stsc121322g00003 896 Pfam NB-ARC domain 164 405 IPR002182 GO:0043531
Stsc121322g00003 896 FunFam Probable disease resistance protein At1g61300 144 311 - -
Stsc121322g00003 896 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 34 853 - -
Stsc121322g00003 896 SUPERFAMILY L domain-like 473 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121322g00003 Stsc-Chr121322 13357 17245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121322g00003 163 855 WRKY Transcription Factor Family AT5G45050 22.222 3.44e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121322g00003 - K13459 adu:107480591 1548.49