Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121322g00001 ATGGGGAGAACACCTTGTTGTGAGAAGAATGGACTGAAGAAGGGGCCATGGACGCCGGAGGAGGATCAGAAGCTCGTTGATTACATTCACAAACATGGCTACGGCAACTGGAGAACACTCCCTAAGAATGCCGGGTTGCAAAGATGCGGAAAGAGTTGCCGTCTGCGGTGGACAAACTACCTCCGCCCTGATATAAAGCGAGGTCGATTCTCTTTCGAAGAGGAAGAGACCATAATACACCTTCACAGCATTCTTGGAAACAAGTGGTCTGCAATTGCGTCACGGCTACCTGGAAGAACAGACAACGAAATAAAGAATTATTGGAATACACACATTAGGAAGAGGCTACTGAGGATGGGAATAGATCCAGTGACACATAACCCACGGCTAGACCTTCTAGACCTGTCATCTCTGTATGGTTCAATATCACACATGCAACACCCTCTCCACCATCTTAACCCTGAGCTTCTCAAACTGGCCACCTCACTCTTCTCTCAAAATTCTCTTCTTAACAACAATAATCTCAACCGCCAGCAGAACCAATTCATCAGTGATGATGATGTTTCTTTGCCTTACCCTCAAGCACAGTTTCTAGAATATTCCAATAATAATAATGTGGTGGACTCATCATCATACCCATCAAATCTGCACCATGATGAGCTAATCAGCAGTAGTAGTAGTGATTATTGGCAAGCCAATAATAATGTTGGAATTGCTTCAACTTCTAGCCCTTATTATTATGTCAATGACCAATTACCACCAAGTTATTATTATAGTAATAACAACTACTACTCTCATCATGCAAATCTTGTGGACCCACCTATGTCTGAAACCTCAACCTTCCATTCCAATAATAATAGCAGCAACTTTGTTTCAGTATCCACGCCTTCCTCAAGCCCCAAACCCTTGAATTCTTCTTATGTCAATGGAAACAACAGTAGCACAGAGGACGAGAGAGAAAGCTATGTCAGCACCAATAACACCGTCTTCAGATTTGAAATCCCAGATATGCTATTAGATGTCAATGCATTCGTGTAA 1038 0.4268 MGRTPCCEKNGLKKGPWTPEEDQKLVDYIHKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIHLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHNPRLDLLDLSSLYGSISHMQHPLHHLNPELLKLATSLFSQNSLLNNNNLNRQQNQFISDDDVSLPYPQAQFLEYSNNNNVVDSSSYPSNLHHDELISSSSSDYWQANNNVGIASTSSPYYYVNDQLPPSYYYSNNNYYSHHANLVDPPMSETSTFHSNNNSSNFVSVSTPSSSPKPLNSSYVNGNNSSTEDERESYVSTNNTVFRFEIPDMLLDVNAFV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121322g00001 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc121322g00001 345 CDD SANT 69 112 IPR001005 -
Stsc121322g00001 345 CDD SANT 16 61 IPR001005 -
Stsc121322g00001 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc121322g00001 345 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc121322g00001 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 279 - -
Stsc121322g00001 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Stsc121322g00001 345 FunFam Transcription factor MYB39 69 130 - -
Stsc121322g00001 345 Gene3D - 69 116 - -
Stsc121322g00001 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc121322g00001 345 MobiDBLite consensus disorder prediction 277 321 - -
Stsc121322g00001 345 Gene3D - 13 66 - -
Stsc121322g00001 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc121322g00001 345 SMART sant 13 63 IPR001005 -
Stsc121322g00001 345 SMART sant 66 114 IPR001005 -
Stsc121322g00001 345 FunFam MYB-related transcription factor 13 66 - -
Stsc121322g00001 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121322g00001 Stsc-Chr121322 3515 5026 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121322g00001 1 345 MYB Transcription Factor Family AT4G21440 54.054 2.11e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121322g00001 Myb_DNA-binding 9.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121322g00001 K09422 - qsa:O6P43_012553 353.599