Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121320g00002 ATGGCAAATAGAACTCATCATCCTTCAGTGTTTCTGGTTGTGGTTACAATTTTGCTTTCCCTCTATCGATCGGAGCAACGGCAATCACTGCAGTCTCTGACCCTCTTGAGAATTCAGCAGCTATTGAATTTTCCTGTTGAAGCAAGCAACTGGAACAACAACCACTTAGATTTTTGCAAGGGAGATTCAAACTCTTCTTCTCTCACTGTGGTATGCTATGAAGGAAACATAACACAGCTTCACATAACTGGTGACCGAACTGCACCGCTTCCCAAGAACTTCTCAATGGATTCTTTTGTCAAAACCCTCACAAGGCTTCCAAGTTTGAAGGTCCTCACACTGGCTTCTCTTGGTGTCTGGGGTCCCTTGCCTGACAAGATTTCGCGGCTGGAATCGCTGGAGATTGTTAATGTGAGTTCCAATTTTCTGTATGGTGCCCTGCCTAGAGAGGTTTCATCAATGTTGAATCTCCAAACACTCATTCTTGATAACAATTTGTTCTCCGGCCGGCTTCCAGATTGGCTTGACTCGCTTTCAACCTTAAGAGTGTTAAGTTTGAAGAACAATTTATTCAATGAATCACTTCCAAATTCTCTTGGTAGCTTGGAGAATTTGAGGATTCTTTCACTTTCACATAACCACTTTTTTGGGCTAGTACCTGATTTGAGCAGATTGACAAATCTTCAAGTGTTGGAACTAGATGATAATGCTTTTGGACTGCAGTTTCCTCGGATTGGTAACAAATTGGTTACTTTAGTGCTAAGGAACAATAGTTTCAGGTCTGGAATCCCGGCTGGATGGAGCTCATATTTTCAGCTCGAACGCTTAGATATTTCATCAAACACTTTCGTGGGGCCATTCCAGCCAGCATTGCTATCTCTTCCTTCAATTACCTATCTGAACATTTCTGGAAACAGATTAACAGGGAAGCTTTTTGAGAATCTGTCTTGCAATTCTGAACTTGATGTGGTGGATTTGTCCTCGAATCTCTTGACTGGTACCTTACCAAAATGCTTGATCTCAAATTCAAGTAATAGGACTATACTATATGCCAGAAATTGTTTAGAGACGAGGAATCAGACTCAGCAGCCGGCGCCGTTTTGCCACACAGAAGCATTAGCAGTTGGGATATTACCTGACATAAAGAAGAAGCACAAAGAACATGTGTCAAAGGTAGTTATTTCCCTTGGCATAGTAGGTGGGGCTCTTGCAGGAGTAGCACTTGCTTTGCTGATTTTCTTTCTTGTTAGAAGAAGAAATTTTAGAAGAAGGATGAAGAATCCTCCAACAAGGTTTATATCAGAGAATGCAGCTTCTGGATACACCTCTAAGTTGCTCTCTGAAGCAAGATACATATCACAAACAAAGAAGTTTGGAGCAGTAGGCCTGCCGAGTTATCGAAGCTTTTCGTTGGAAGAGATTGAGGCAGCTACAAACTACTTTGACACAGCTTCTTTAATGGGTGAAGATTCTTATGGGAAGATGTACAGAGGTCAGCTGAAGAACGGTTCGCTCATTTTCATAAGATGTGTATTACTGAAAAAGAGGTACAGCACGCAGAACTTCACACACCACATAGAGTTGATATCGAAACTTAGGCACCGGCATCTAGTCAGTGCTCTCGGACACTGCTTCGAATGTTCTCTAGATGATTCAAGTGTCAGCAAAATATTTCTTGTCTTTGAATATGTACCAAATGGCACACTCAGGAGCTGGATCTCTGATGGTGATGCAATGAAATCAATTAGTTGGATCCAGCGCTTGGGAGCCGCGACCGGCATAGCGAAGGGAATCCAGTTCTTGCATACAGGGATTGTCCCTGGTGTATATTCAAACAATATTAACTCAGAAGATGTTCTACTGGATCAGAATCTTGTTGCAAAAATCTGCAGTTATAACCTGCCTTTGTTATCTAACATAGGAAAGATTCGGCATGGAAGTTCTTCCAGCGGATCGAAAAATTCTAGCACGAAAAAAAGTGTAAATGATGAAAAAAAGTCTGATATATATGACCTTGGAGTTATTCTACTGGAACTCATTCTTGGAAGGGCAATAAAATTAAGCAAAGATGCAGATGCTTTTAAGGAACTGTTACAAGCAACCATAGTGGCTGACGACGAAGCTAGAAGAAGAATCATTGATCCTGCAATCCGCAAGGAATGCATGGATGAATCGCTGAAGACAATGATGGAGATCTGCGTGCGGTGCCTCGCGAAAGATCCGGCAGAGAGGCCATCCATAGAAGATGTGTTATGGAACTTGCAATTTGCAGCTCAAGTTCAAGATGCATGGAGAGGGGACTCTCAAAGTAGTGAGGGAGGTTCACCTTATGAATCTAGAAGAGTTTCCTTCCATTAG 2358 0.4203 MANRTHHPSVFLVVVTILLSLYRSEQRQSLQSLTLLRIQQLLNFPVEASNWNNNHLDFCKGDSNSSSLTVVCYEGNITQLHITGDRTAPLPKNFSMDSFVKTLTRLPSLKVLTLASLGVWGPLPDKISRLESLEIVNVSSNFLYGALPREVSSMLNLQTLILDNNLFSGRLPDWLDSLSTLRVLSLKNNLFNESLPNSLGSLENLRILSLSHNHFFGLVPDLSRLTNLQVLELDDNAFGLQFPRIGNKLVTLVLRNNSFRSGIPAGWSSYFQLERLDISSNTFVGPFQPALLSLPSITYLNISGNRLTGKLFENLSCNSELDVVDLSSNLLTGTLPKCLISNSSNRTILYARNCLETRNQTQQPAPFCHTEALAVGILPDIKKKHKEHVSKVVISLGIVGGALAGVALALLIFFLVRRRNFRRRMKNPPTRFISENAASGYTSKLLSEARYISQTKKFGAVGLPSYRSFSLEEIEAATNYFDTASLMGEDSYGKMYRGQLKNGSLIFIRCVLLKKRYSTQNFTHHIELISKLRHRHLVSALGHCFECSLDDSSVSKIFLVFEYVPNGTLRSWISDGDAMKSISWIQRLGAATGIAKGIQFLHTGIVPGVYSNNINSEDVLLDQNLVAKICSYNLPLLSNIGKIRHGSSSSGSKNSSTKKSVNDEKKSDIYDLGVILLELILGRAIKLSKDADAFKELLQATIVADDEARRRIIDPAIRKECMDESLKTMMEICVRCLAKDPAERPSIEDVLWNLQFAAQVQDAWRGDSQSSEGGSPYESRRVSFH 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121320g00002 785 ProSiteProfiles Leucine-rich repeat profile. 204 226 IPR001611 GO:0005515
Stsc121320g00002 785 ProSiteProfiles Protein kinase domain profile. 481 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121320g00002 785 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 564 770 - -
Stsc121320g00002 785 Gene3D Ribonuclease Inhibitor 195 374 IPR032675 -
Stsc121320g00002 785 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 394 766 - -
Stsc121320g00002 785 Gene3D Phosphorylase Kinase; domain 1 443 563 - -
Stsc121320g00002 785 Gene3D Ribonuclease Inhibitor 31 194 IPR032675 -
Stsc121320g00002 785 Pfam Protein tyrosine and serine/threonine kinase 485 751 IPR001245 GO:0004672|GO:0006468
Stsc121320g00002 785 MobiDBLite consensus disorder prediction 765 785 - -
Stsc121320g00002 785 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Stsc121320g00002 785 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 28 247 - -
Stsc121320g00002 785 SUPERFAMILY L domain-like 55 355 - -
Stsc121320g00002 785 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 454 563 - -
Stsc121320g00002 785 Gene3D Transferase(Phosphotransferase) domain 1 564 771 - -
Stsc121320g00002 785 SUPERFAMILY Protein kinase-like (PK-like) 463 756 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121320g00002 Stsc-Chr121320 20233 23915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121320g00002 44 776 Miscellaneous Gene Families AT3G03770 60.298 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Stsc121320g00002 PK_Tyr_Ser-Thr 2.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121320g00002 - - gmx:100807539 1133.63