Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121319g00002 ATGCTTCAAAGCTTGGTCCCTCGTTCGCCTATCAATCCAAACCCTAACTCAATGAACACCAAGCGCGACCGCCGCGACGCCACCGCAGACGAGGAGCCTTCCTTCAAGCGCGCAAATTTCTCCGGCGACAAGTCAACATCGGCGCAGCCGGTGGGAGAACCCGAGGGACACGAGGAAGAACAGCAGCAACAAGTTTTCGAAGCGGCGGAAGCTGGAGGAGGAGAATCCACCGGACTTAAGCTTCTCGGTTTGCTGCTTCAATGCGCGGAGTGCGTCGCCATGGACAACCTTGACTTCGCGAACGATCTCCTCCCGGAGATCGCGGAGCTCTCGTCGCCTTTCGGAACCTCGCCGGAGCGAGTCGGCGCGTACTTCGCACAGGCTCTGCAGGCTCGCGTGGTGAGTTCATGCCTCGGAGCGTACTCGCCTCTCACGGCGAAATCGGTAACCCTAACTCAGTCGCAGAGAATCTTCAACGCGTTCCAGTCCTACAACTCGGTGTCGCCGCTCGTTAAGTTCTCTCACTTCACCGCAAACCAAGCGATCTTCCAAGCTCTCGACGGCGAGGATCGCGTTCACATCATCGACCTCGACATCATGCAAGGTCTCCAATGGCCAGGACTGTTCCACATCCTCGCCTCGCGATCCAGGAAGATCCGGTCCATGCGGATCACCGGATTTGGATCCTCGTCGGAGCTTCTAGAATCCACCGGAAGAAGGCTCGCCGATTTCGCTAGCTCGCTCGGATTACCGTTCGAGTTTCATCCGGTGGAAGGGAAAATCGGAAGCATCACGGACCTGAGTCAACTCGGCGTTCGACCAGGTGAAGCGATCGTAGTTCACTGGATGCACCATTGCTTATACGACATAACAGGGAGCGATTTGGGTACGTTGAGATTGCTGAGTCAGCTGAGGCCGAAGCTGATCACGACGGTGGAGCAGGATCTCAGCCACGCCGGGAGCTTCCTCGCGAGGTTCGTGGAGGCTTTGCATTATTACAGCGCGTTGTTCGACGCGCTGGGAGACGGTTTGGGTGCAGACAGTTTGGAGAGGCACACGGTGGAGCAGCAGCTTCTAGGGTGCGAGATCAGGAACATCGTGGCCGTTGGAGGACCAAAGAGAACCGGTGAGGTTAAAGTGGAGCGGTGGGGAGAGGAGCTGAAACGGGTCGGGTTTAGACCCGTTTCTCTTCGGGGAAACCCGGCTTCTCAGGCTAGTTTGCTCCTTGGGATGTTCCCTTGGAGAGGGTATACCCTGGTTGAGGAAAACGGTTCTCTGAAGCTTGGTTGGAAGGATCTTTCTTTGTTGACCGCTTCTGCTTGGCAACCGTCCGATTTGATTACTTATCCTGATTGA 1356 0.5642 MLQSLVPRSPINPNPNSMNTKRDRRDATADEEPSFKRANFSGDKSTSAQPVGEPEGHEEEQQQQVFEAAEAGGGESTGLKLLGLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGAYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRSRKIRSMRITGFGSSSELLESTGRRLADFASSLGLPFEFHPVEGKIGSITDLSQLGVRPGEAIVVHWMHHCLYDITGSDLGTLRLLSQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGEELKRVGFRPVSLRGNPASQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLTASAWQPSDLITYPD 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121319g00002 451 Pfam GRAS domain family 83 442 IPR005202 -
Stsc121319g00002 451 MobiDBLite consensus disorder prediction 1 18 - -
Stsc121319g00002 451 ProSiteProfiles GRAS family profile. 72 442 IPR005202 -
Stsc121319g00002 451 MobiDBLite consensus disorder prediction 1 63 - -
Stsc121319g00002 451 MobiDBLite consensus disorder prediction 19 38 - -
Stsc121319g00002 451 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 62 437 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121319g00002 Stsc-Chr121319 21534 22889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121319g00002 18 445 GRAS Transcription Factor Family AT5G41920 66.513 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc121319g00002 GRAS 2e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121319g00002 - - gmx:100816249 751.895