Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121319g00001 ATGGCTTGTTCAACAGTAGAAGGTGATGTTACACTCCCAGGGTTCAGGTTTCACCCAACTGAAGAAGAGCTTCTTGATTTCTATCTCAAGAACATGGTCCTAGGAAAGAAGCTTCGTTTCGATGTCATAGGCTTCCTCAACATCTATCACCATAATCCTTGGGACTTGCCAGGGTTGGCGAAGGTGGGGGAGAGGGAATGGTACTTCTTCGTGCCGAGAGACAGAAAGCATGGCACCGGGGGAAGGCCTAACCGGACCACCGAGAGAGGGTTCTGGAAAGCCACCGGTTCGGACCGGAAGATCGTTACGTTATCCGATCCGAAACGCATAATTGGATTGAGGAAGACACTGGTTTTCTATGAGGGAAGAGCTCCACGTGGATCTAAGACCGATTGGGTCATGAATGAGTACCGTTTACCTGACAATTGCCACTTGCCTAAGGACATAGTGCTATGCAAGATATACAGGAAGGCGACTTCATTGAAGGTGTTGGAGCAGAGAGCAGCAATAGAGGAAGAGATGAAGCAGATGGTAGGTTCCCCTGAATCCACACCTTCCTCCACAGACACCATGTCCTACGAAGAACAACAGAATCTGCACTTGTTACCACAACATGTTGTTCTCAAGAAAGAGGTTGAAGCTGAACATGAAGAAGAAGAAGAAAAGATGGTACATGTCACAGTGGCAACAAAGCAAGAAAACAACACCACAGCAAAGAGCAACAAAAGTTGTAACACTAACACAAACACAAGTAGTCTTCAATTGCCTTTTGGGAAGGACAAAATCCCAGAGCTTCAGATGCCTATGATGATCACCGATTGGACCCAAGACACATTTTGGGCTCAATTGAATAGTCCATGGCTTCAAAACTATACTTACTCCAACATATTAAACTTCTAA 900 0.4567 MACSTVEGDVTLPGFRFHPTEEELLDFYLKNMVLGKKLRFDVIGFLNIYHHNPWDLPGLAKVGEREWYFFVPRDRKHGTGGRPNRTTERGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGSKTDWVMNEYRLPDNCHLPKDIVLCKIYRKATSLKVLEQRAAIEEEMKQMVGSPESTPSSTDTMSYEEQQNLHLLPQHVVLKKEVEAEHEEEEEKMVHVTVATKQENNTTAKSNKSCNTNTNTSSLQLPFGKDKIPELQMPMMITDWTQDTFWAQLNSPWLQNYTYSNILNF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121319g00001 299 FunFam NAC domain-containing protein 67-like 20 161 - -
Stsc121319g00001 299 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Stsc121319g00001 299 Gene3D NAC domain 20 161 IPR036093 GO:0003677|GO:0006355
Stsc121319g00001 299 ProSiteProfiles NAC domain profile. 11 157 IPR003441 GO:0003677|GO:0006355
Stsc121319g00001 299 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 240 - -
Stsc121319g00001 299 SUPERFAMILY NAC domain 10 157 IPR036093 GO:0003677|GO:0006355
Stsc121319g00001 299 Coils Coil 209 229 - -
Stsc121319g00001 299 MobiDBLite consensus disorder prediction 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121319g00001 Stsc-Chr121319 7310 9576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121319g00001 9 292 NAC Transcription Factor Family AT2G17040 59.722 4.96e-119 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc121319g00001 NAM 1.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121319g00001 - - adu:107477264 514.998