Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121318g00003 ATGAAGCGCCAGGCTCCCCTCCCTTCCACCAAGCCGCCTTTTGCTCCGCCCGCAGACTTCCATCGCTTCGCCACCGACCACCGCACAACTTCTCACAACGACGCCGACGCCATTGCCGTTAAAACTCCTATTCAGCAATTAAAGCGGAAGAGTGTTACAACTGATTTTGAAGGTGATTCTGGTATGACTCCAGCATCCACTGAAGCAGTTAATAGGCCTTTCCGGACACCAATCTCAAGAAAGATGGGAAAGGCAAGCAAAGCATCTCGACTTACAAAATGCAACAGATCAGTACCTCAAATCCCTGGATCAAATATCAGTTCACCATCAGCAAATAATCTCACACCTTCTGGTCCATGCCGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTTGACTTGAATAAAGCTGCTGAGACATTAGAGGTACAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATCGGCCTTATAGAAAAGAAACTAAAGAACAGAATTCAATGGAAGGGCTTGGATGTTTCAAGACCAGGGCAGGCTGCTGATAGTTTTGTTAGTTTACAGGCTGAAGTTGAAAATCTTAGAAATGAAGAGCACCTGTTAGATGAGCAAATAAGAGAGATGCAAGAAAGACTAAGAGGTTTTAGTGAAGATGAAAACACTCAAAGGTATCTTTTCATCACAGAGGAAGATATAAAGAGTTTGCCCTCCTGTCAGAATGAAACCTTGATAGCAATTAAAGCACCATATTGCACTACTTTGGAGGTCCCTGATCCTGATGAGGTTGTTGATTATCCTCAGAGGAAATACAGGATTGTCCTGAGAAGCACAACGGGCCCAATAGATGTTTATCTTCTTAGTCAATTTGAAGAGAAATTTGAGATCAATGGTGTTAATGTGGGGCCAAATATTCCATCAAGCCCAGATTTCAACAAGCATCAATCAACAGTGGTCTCGAATGATAGAGGGAAGGGCCTTGAAATGGGGGGAGATGATGTATATAGGCCTTCAGAATTATCTAATGCACAGGATTTTGCAAGTGGAATCACGAAGATTGTTCCTTCAGATTTTGAGAGCGATGCTGATTACTGGCTTTTATCGGATGCTGATGTTAGCATAACAGACATGTGGAGGACAGAACCCGAAGTTGAATGGGAAAATCTGGATACTCATAAAGAAGATTATTGTATGGGTATGACTCATGTGAGCCCACCACCTCCCCAAACTCCTCCCTCAAACATAAGTGAAGCACCTTCTGCATCTAACCCTGCTGTAAGTTGA 1308 0.4274 MKRQAPLPSTKPPFAPPADFHRFATDHRTTSHNDADAIAVKTPIQQLKRKSVTTDFEGDSGMTPASTEAVNRPFRTPISRKMGKASKASRLTKCNRSVPQIPGSNISSPSANNLTPSGPCRLLTKKFINLIKQAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGQAADSFVSLQAEVENLRNEEHLLDEQIREMQERLRGFSEDENTQRYLFITEEDIKSLPSCQNETLIAIKAPYCTTLEVPDPDEVVDYPQRKYRIVLRSTTGPIDVYLLSQFEEKFEINGVNVGPNIPSSPDFNKHQSTVVSNDRGKGLEMGGDDVYRPSELSNAQDFASGITKIVPSDFESDADYWLLSDADVSITDMWRTEPEVEWENLDTHKEDYCMGMTHVSPPPPQTPPSNISEAPSASNPAVS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121318g00003 435 Coils Coil 193 220 - -
Stsc121318g00003 435 PANTHER TRANSCRIPTION FACTOR E2F 60 392 IPR015633 GO:0000978|GO:0006357
Stsc121318g00003 435 CDD E2F_DD 195 297 IPR032198 GO:0046983
Stsc121318g00003 435 FunFam E2F transcription factor 1 117 182 - -
Stsc121318g00003 435 Gene3D - 119 182 IPR036388 -
Stsc121318g00003 435 SMART E2F_TDP_2 115 180 IPR003316 GO:0005667|GO:0006355
Stsc121318g00003 435 Pfam E2F transcription factor CC-MB domain 196 295 IPR032198 GO:0046983
Stsc121318g00003 435 MobiDBLite consensus disorder prediction 409 435 - -
Stsc121318g00003 435 Coils Coil 131 151 - -
Stsc121318g00003 435 Pfam E2F/DP family winged-helix DNA-binding domain 121 180 IPR003316 GO:0005667|GO:0006355
Stsc121318g00003 435 SUPERFAMILY "Winged helix" DNA-binding domain 121 178 IPR036390 -
Stsc121318g00003 435 MobiDBLite consensus disorder prediction 1 38 - -
Stsc121318g00003 435 SUPERFAMILY E2F-DP heterodimerization region 194 296 IPR037241 -
Stsc121318g00003 435 Gene3D - 188 297 - -
Stsc121318g00003 435 MobiDBLite consensus disorder prediction 314 335 - -
Stsc121318g00003 435 MobiDBLite consensus disorder prediction 314 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121318g00003 Stsc-Chr121318 15759 19669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121318g00003 2 430 E2F-DP Transcription Factor Family AT5G22220 49.567 2.02e-123 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Stsc121318g00003 E2F_CC-MB 6.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121318g00003 K06620 - gmx:100819817 578.941