Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121316g00007 ATGGAGGACCAAAGTACTCTTACTATTAGGGACCCTGCAATTAAGCTTTTTGGTCAGAAGATTCCCCTTCCCGGAGATCCTGATGTTCTTCCCGCCGGTGATCCCATCGATCAAGGAGAGGAGCTGGATGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAACAGGATGACGAGGAGGAAGACGGAGAACCCCAAGAGACTCAAGGGGATAAGGATGCCGAAGCTGAAAATCTTACCACTCAAGAGCAAGAAGCCGATCCTCCTCCTAATGTAGAAGAGAACAAGAAATCAGCCACATCGCCTGAGACTATGGTGAATCCAAAAACACCTGCCATAGAAGAAGACTCTGCAAAATCAAAAAGTGACAAGTCAGAGAAGGAACAAAGCGACACATCCAATCCGCAAGATCAGAAACCCCTGAAGAAGCCGGATAAATTGCTTCCATGCCCCCGCTGCAATAGCATGGATACTAAGTTCTGTTACTACAACAACTACAACGTCAACCAGCCACGTTATTTCTGTAAAGCCTGTCAACGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCGGTTGGGGCAGGACGGCGAAAAAACAAGAACTCTGCCAACCATTATCGCCACATCACAATCTCTGAAGCTCTTCAAGCAGCTAGAATTGATGCTCCTAATGGGACTCATCTCCCTGCATTGAAAAGCAATGGAAGAGTCCTCAACTTCGGAATAGATGCACCAATCTGCGATTCCATGGCATCTGTTCTTAACCTTGGAGAGAAAAAGGTTCTTAATGGCACAAGAAATGGATTCCATCATGGTTTTGACGATCAAAGATTGAAAGTTCCTTGCAAAAGTGGGGAAAACGGCGAAGCTTGCACAAGTTCATCTCCTGCTGCAGTTTCAAATGGAGAAAACAGTAAAAGTACTTTCCAAGAACCGATGCTTCCAAACAATGGTTACCTTCCTCAAGTTCCTTGCATTGCTAGTGTTCCTTGGCCTTATCCGTGGAATGCTCCGATTCCCTCACCAGCTATGTGTCCTCCAGGATTTCCTGCCCTTCCTTTCTATCCTGCAGCTTTTTGGAACTGCAGCATGCCAGGGAACTGGAATGTGCCGTGGTTTCCTCCACAGTCCTCTCCTTCAAACCCGAAATCTCCAAGTTCCGGTCCAAATTCTCCAACTCTGGGGAAGCACTCTCGGGACAGTGACATGAGTAACCAAGACTCTTTGAGCAAAGAAGAGCCACCGAAGCAGAGAAACGGAAACGTTTTGGTTCCCAAAACGTTAAGAATCGATGATCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGGATCAAGAATGAATCCATCAGTGGGGGAGGCATGTTTAAGGCCTTCCAATCAACAAAAGAAGAAAAGAATCAAGTCGAAGCTTCTCCTGTGTTGCGGGCTAACCCCGCAGCTTTGTCGAGATCCCTTAATTTTCACGAGAACTCATGA 1485 0.4667 MEDQSTLTIRDPAIKLFGQKIPLPGDPDVLPAGDPIDQGEELDEEEEEEEEEEEQDDEEEDGEPQETQGDKDAEAENLTTQEQEADPPPNVEENKKSATSPETMVNPKTPAIEEDSAKSKSDKSEKEQSDTSNPQDQKPLKKPDKLLPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSANHYRHITISEALQAARIDAPNGTHLPALKSNGRVLNFGIDAPICDSMASVLNLGEKKVLNGTRNGFHHGFDDQRLKVPCKSGENGEACTSSSPAAVSNGENSKSTFQEPMLPNNGYLPQVPCIASVPWPYPWNAPIPSPAMCPPGFPALPFYPAAFWNCSMPGNWNVPWFPPQSSPSNPKSPSSGPNSPTLGKHSRDSDMSNQDSLSKEEPPKQRNGNVLVPKTLRIDDPSEAAKSSIWATLGIKNESISGGGMFKAFQSTKEEKNQVEASPVLRANPAALSRSLNFHENS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121316g00007 494 PANTHER CYCLIC DOF FACTOR 2 10 494 IPR045174 GO:0003700|GO:0006355
Stsc121316g00007 494 MobiDBLite consensus disorder prediction 37 67 - -
Stsc121316g00007 494 ProSiteProfiles Zinc finger Dof-type profile. 147 201 IPR003851 GO:0003677|GO:0006355
Stsc121316g00007 494 MobiDBLite consensus disorder prediction 18 148 - -
Stsc121316g00007 494 MobiDBLite consensus disorder prediction 289 310 - -
Stsc121316g00007 494 ProSitePatterns Zinc finger Dof-type signature. 149 185 IPR003851 GO:0003677|GO:0006355
Stsc121316g00007 494 MobiDBLite consensus disorder prediction 80 106 - -
Stsc121316g00007 494 Pfam Dof domain, zinc finger 145 201 IPR003851 GO:0003677|GO:0006355
Stsc121316g00007 494 Coils Coil 36 62 - -
Stsc121316g00007 494 MobiDBLite consensus disorder prediction 400 414 - -
Stsc121316g00007 494 MobiDBLite consensus disorder prediction 375 430 - -
Stsc121316g00007 494 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121316g00007 Stsc-Chr121316 35754 38833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121316g00007 7 492 C2C2-Dof Transcription Factor Family AT3G47500 46.337 1.77e-122 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc121316g00007 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121316g00007 - - gmx:778113 694.115