Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121312g00001 ATGGACTCTAGAACACATTATAATCCCCGCACTGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGCCGAGCTGGTCTTATCAAAGCCCTCACCACCGATGTTGAGGAATTCTACAACCAATGTGACCCTGAGAAGGAGAACTTGTGCTTGTACGGCTTTCCTAGCGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCACCCGAGCTTCCTGAACCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAGGACTGGTTATCTTTGGTTGCTGTTCACAGTGACGCATGGTTACTTGCTATCGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGCTGACAGGAAACGCCTTTTCAATATGATTAATGAAGTGCCCACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTGAAGGAGAAGTCTTCAGTTTCGAACCATAGCGGCAGCAAATCGAAGTCCAACTCTAAAGCA 495 0.4545 MDSRTHYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINEVPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSNSKA 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121312g00001 165 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Stsc121312g00001 165 PANTHER CPG BINDING PROTEIN 8 164 IPR045104 GO:0006355|GO:0042393
Stsc121312g00001 165 MobiDBLite consensus disorder prediction 150 165 - -
Stsc121312g00001 165 MobiDBLite consensus disorder prediction 144 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121312g00001 Stsc-Chr121312 5 1955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121312g00001 6 164 Alfin-like Transcription Factor Family AT5G20510 80.503 3.46e-89 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121312g00001 K26274 - gmx:100170700 287.73