Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121308g00002 ATGGCGACGGAGACGGCGACGGGGGCTGAGGAATCAGAACTCAAAACGTATTGGTGCCACGAATGCGACATGAGCGTCGCCCTCTCCTCTTCCTCTTCCCCTTCACCTTCCCCTCTCCTCTGTCCGCACTGCCACACCCACTTCCTAGAACTCATGGACTCACCTTCCCTAAACGACGCCGTTTCACCACTCTCCTCTCTCTCCCTCTTTGATTCCCCCTTCTTTCACCGCCTAATCCATCACCACCTCGTGTCCAACTCCAACACCACCGACACTCAAAACGACGACGTCGTTTTCGAGGACCCACTCTCTTTACTCTCCCCACCGCTAATTCCCTCCAAAACGGCGTCGTCCAAGTCCCCTGCAACCACCGTCCCTGTAATTCTCGTCACCGCCGCGTTGCTCTCCCAGCTCGATCCAAACGGCCTCGTTTCGTGCGCGGTTTGCAAGGACGACATTGAAATCGACGAGGAAGCGAAGCAGCTTCCGTGTAACCACCTTTACCACTCCGATTGCATCACGCCGTGGCTCGAACTCCACGATTCGTGCCCGCTCTGCCGGTTCAGACTCTCGGCGGAGGCGGAGGAGGACGAAGAAGATGTACTCGATGGTGCTTTGACGTCGAGCGAGATCAGGAGTCAGCTGAGGGCGGCGATGGTGAGGCTTTCAGAGTTAATGGAGGAAGAGGAGGACGATTTCTACGGGTTGAGGACCACGCTGAATCACATTGCCTCAAGGCACGGCTTGATTGGCTCCAATGGTGCTTCTGTGGTGAGTGAGGAGGGTGAGGGTGGTGGTTCGGAGAATTTTTCCAGATTCAGTGGTGGCAGTGGCAGTGAATGA 843 0.5635 MATETATGAEESELKTYWCHECDMSVALSSSSSPSPSPLLCPHCHTHFLELMDSPSLNDAVSPLSSLSLFDSPFFHRLIHHHLVSNSNTTDTQNDDVVFEDPLSLLSPPLIPSKTASSKSPATTVPVILVTAALLSQLDPNGLVSCAVCKDDIEIDEEAKQLPCNHLYHSDCITPWLELHDSCPLCRFRLSAEAEEDEEDVLDGALTSSEIRSQLRAAMVRLSELMEEEEDDFYGLRTTLNHIASRHGLIGSNGASVVSEEGEGGGSENFSRFSGGSGSE 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121308g00002 280 Pfam zinc-ribbon 16 52 IPR039525 GO:0061630
Stsc121308g00002 280 SUPERFAMILY RING/U-box 145 191 - -
Stsc121308g00002 280 ProSiteProfiles Zinc finger RING-type profile. 146 187 IPR001841 -
Stsc121308g00002 280 Coils Coil 212 232 - -
Stsc121308g00002 280 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 72 188 - -
Stsc121308g00002 280 SMART ring_2 146 186 IPR001841 -
Stsc121308g00002 280 Pfam Ring finger domain 145 187 IPR001841 -
Stsc121308g00002 280 MobiDBLite consensus disorder prediction 255 280 - -
Stsc121308g00002 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 205 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121308g00002 Stsc-Chr121308 8616 11792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121308g00002 11 264 C3H Transcription Factor Family AT3G60080 34.007 1.26e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121308g00002 K11982 - qsa:O6P43_029465 240.35