Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121307g00004 ATGAAGACGATTCTGTCATCGGAAACGATGAACATTCCCGACGGGTTGAACATCAAGGTCCACGCCAAAGTGATCGAGGTGGAAGGTCCACGTGGCAAGCTTGTACGCGATTTCAAGCACCTCAACCTTGATTTCCAGCTCATCAAGGACGAGAACGGAGATAAGAAGCTTAAGATCGACGCCTGGTTTGGCTCACGGAAGACCTCCGCCGCCATCAGAACTGCTCTCAGCCACGTCGAGAATCTCATCACCGGCGTCACCAAGGGCTACCGCATCGCCAACAACAACACCTCCATCGAGATCCGCAACTTCCTTGGCGAGAAGAAGGTGAGGAAAGTGGATATGCTTGAGGGAGTCTCTGTTGTTCGATCTGAAAAGGTAAAGGATGAGTTGATCTTGGATGGAAATGACATTGAGCTTGTTTCACGCTCTTGTGCCCTCATTAACCAGAAATGCCATGTCAAAAACAAAGATATTCGGAAGTTCCTTGATGGTATCTATGTTAGCGAGAAGGGAACAATACTTGATGAGCAGTAA 537 0.4842 MKTILSSETMNIPDGLNIKVHAKVIEVEGPRGKLVRDFKHLNLDFQLIKDENGDKKLKIDAWFGSRKTSAAIRTALSHVENLITGVTKGYRIANNNTSIEIRNFLGEKKVRKVDMLEGVSVVRSEKVKDELILDGNDIELVSRSCALINQKCHVKNKDIRKFLDGIYVSEKGTILDEQ 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121307g00004 178 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 177 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc121307g00004 178 SUPERFAMILY Ribosomal protein L6 88 171 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc121307g00004 178 ProSitePatterns Ribosomal protein L6 signature 2. 150 171 IPR002359 GO:0003735|GO:0005840|GO:0006412
Stsc121307g00004 178 Gene3D - 88 178 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc121307g00004 178 Pfam Ribosomal protein L6 12 89 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc121307g00004 178 Pfam Ribosomal protein L6 88 165 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc121307g00004 178 Gene3D - 1 87 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Stsc121307g00004 178 FunFam 60S ribosomal protein L9 88 178 - -
Stsc121307g00004 178 FunFam 60S ribosomal protein L9 1 87 - -
Stsc121307g00004 178 SUPERFAMILY Ribosomal protein L6 1 89 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121307g00004 Stsc-Chr121307 19870 21465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121307g00004 1 178 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 76.289 1.86e-103 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121307g00004 K02940 - gmx:100306058 320.087