Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121306g00006 ATGTTTTCCCCGTTTGTTTCGTGGCTCATGTCTTCCACCTCCTCCTCCTCCTCTTCCATTTCTGATGAACAAGAACAAGAACAAGGCACTGACATAGACGACAACTCAACCGACCAACCATACCCTCAAAACGACACCCTCAACGACCAAAACGACAACAACAATGACCAACCAAACGACGACGAAAATGATGAGCATTTTCTTAGCTCATGCGCCGGCGGGGACGACGCAATTCCCATTGCTCTTGCGGTTCCCTCCACCGCCACCGCCACCACTGGACCCTCTCCCATCCCCGCTGTCACGGTGGCCTTCACCGCCGCTGACGTTAGAATCCCCGTGGCAACAGCTACCACCGTTGTGACACAGCCGAAACGGCGGCGTGCCGTGAACTATGCAGGCATGATGAAGCAATACCAGAGGCTTTGGACGAAGCAGGACGAGATAGAACTCTTGAGAGGGTACCTTGAACACGTTAGAAGAAACAAAGGCGCAAGAAAGTCCCTCCAAAACGACGTAGCTTTGTTCTACGGTGGCGTGTGCCACAAGCTAAACATGGATTTCAACAAGAACCAGCTTGTTGAGAAGCTGAGGAGGCTAAAACGGAAACACAAGGTGACTTTGGATAAGGGCAATTTGGGGAAAATCTCCTTCAGGAACCCTCAGGACGAGTCCATTTTCAACATTTCGCACAAGATTTGGGGCAATGACATTGACGCTGAACAATTAGATGAAGAAGAAGAAGCAGCATTGGATCTTGATGGTGGTGGCGTTGATGATGATCACGGCAAGGAGAAAGTGAAAATCGAAGAGGTTGTAATTTGTGATGAGATTGAAGAAAGCAATCCGAAGCGGCTGCGGTTAATCGAAAACGAGGCAGAAACTGCTGCTGAATTGCAGATCCAGAGCTTCATTGAAGAAACTATGAGATCTTGTTTCCCACCATTGATGAAGGAATTGTTGGAAGATGAAGGAGGGGTGAAGAAGCCGGTAGAGTTGTGCCCTGGGGTTGGAGATGAGCGAGGTGAGGAATGGAGGAAGCAGATGATTTCAGAGCTTCAAGTGTATTTGAATCGGTTAGAGTTGTTGCAGGATCAGATAAAGGCTAAATTAGAAGAGCTTAGGTCTGATAAGAAATCTAATTTTATGAAAATAGATGCTTCATACTCCTTCCTAATAGGTTTTGCATTTAACCCTAGCCTCCATAGTCACTCTTCTACCGGCCGCCTCCGTTCGCCGTGGAGGGCGTCGTCCTCTCCTTCTCACAAGTCACGACCTTTACCGACTTCAACGCGACTCAACGACCACGCAACCTCCACGGTTCTCGCCGACTCCAACGCTGCTCAACCACCGCGCGGCGCAGCCACAATAGTTCTCGCCGTCACTCCCTTCGCTGTCTGTTCGCCGTGA 1407 0.4961 MFSPFVSWLMSSTSSSSSSISDEQEQEQGTDIDDNSTDQPYPQNDTLNDQNDNNNDQPNDDENDEHFLSSCAGGDDAIPIALAVPSTATATTGPSPIPAVTVAFTAADVRIPVATATTVVTQPKRRRAVNYAGMMKQYQRLWTKQDEIELLRGYLEHVRRNKGARKSLQNDVALFYGGVCHKLNMDFNKNQLVEKLRRLKRKHKVTLDKGNLGKISFRNPQDESIFNISHKIWGNDIDAEQLDEEEEAALDLDGGGVDDDHGKEKVKIEEVVICDEIEESNPKRLRLIENEAETAAELQIQSFIEETMRSCFPPLMKELLEDEGGVKKPVELCPGVGDERGEEWRKQMISELQVYLNRLELLQDQIKAKLEELRSDKKSNFMKIDASYSFLIGFAFNPSLHSHSSTGRLRSPWRASSSPSHKSRPLPTSTRLNDHATSTVLADSNAAQPPRGAATIVLAVTPFAVCSP 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121306g00006 468 MobiDBLite consensus disorder prediction 33 54 - -
Stsc121306g00006 468 PANTHER BNAANNG10740D PROTEIN-RELATED 12 372 IPR007592 GO:0006355
Stsc121306g00006 468 Pfam Protein of unknown function, DUF573 139 234 IPR007592 GO:0006355
Stsc121306g00006 468 MobiDBLite consensus disorder prediction 1 71 - -
Stsc121306g00006 468 MobiDBLite consensus disorder prediction 1 25 - -
Stsc121306g00006 468 MobiDBLite consensus disorder prediction 407 434 - -
Stsc121306g00006 468 Coils Coil 189 209 - -
Stsc121306g00006 468 Coils Coil 345 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121306g00006 Stsc-Chr121306 34501 36973 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121306g00006 138 375 GeBP Transcription Factor Family AT5G28040 35.082 7.58e-38 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Stsc121306g00006 DUF573 6.8e-23 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121306g00006 - - ahf:112775206 459.529