Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121305g00004 ATGTCAAGCATTCAAATGTCTCATGTGGACTTGGAGCAAGGGAGAATCCTCCACCACCACAACCACAACCACCACCACCACCACCATAGCTCAGTGACTGGGAGTGACATTAGTCTATGCTTCTCTGATGCTGATGATGGAGCCTCATGCTACTCCCATTTCTACTCCACAAATGGTGGTGGATCCTATGATGAAGATTGCTGCTCCTATGGTGAAGCCTCAAATGTTGCTGATGATGATGATTGTTCAGTTGAGATTGAAATTGAAAGTGGAGTGCCTGAGATTAAGGTGCATTTGGCCACAAACAATAAAGTGGAGACTAGGGATTGCAGGATTTGCCACCTTGGTCTGGAAAGTGATGATGGGAACAATGAATCTGGTGTTCCAATTGAATTGGGATGTTCTTGTAAAGATGATCTTGCTGCTGCTCACAAGAATTGTGCAGAGGCTTGGTTCAAGATTAAGGGTAACAGGACCTGTGAAATTTGTCATACAATTGCGAGGAATGTGTATTCAGCAAAGAATACGTACAGTGCTGGAACTCTATTGGATTGA 555 0.4396 MSSIQMSHVDLEQGRILHHHNHNHHHHHHSSVTGSDISLCFSDADDGASCYSHFYSTNGGGSYDEDCCSYGEASNVADDDDCSVEIEIESGVPEIKVHLATNNKVETRDCRICHLGLESDDGNNESGVPIELGCSCKDDLAAAHKNCAEAWFKIKGNRTCEICHTIARNVYSAKNTYSAGTLLD 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121305g00004 184 PANTHER ZINC FINGER, RING-CH-TYPE 22 174 - -
Stsc121305g00004 184 ProSiteProfiles Zinc finger RING-CH-type profile. 102 170 IPR011016 GO:0008270
Stsc121305g00004 184 SUPERFAMILY RING/U-box 104 167 - -
Stsc121305g00004 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 176 IPR013083 -
Stsc121305g00004 184 SMART ringv_2 109 164 IPR011016 GO:0008270
Stsc121305g00004 184 Pfam RING-variant domain 110 163 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121305g00004 Stsc-Chr121305 31469 36323 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121305g00004 9 173 C3H Transcription Factor Family AT2G37950 44.379 3.09e-37 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121305g00004 - - gmx:100813946 222.246