Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121305g00003 ATGGATGCAGGGGAGACACAGCCAATGAAATGGGCAATGAGGTTGAGGGTGGCATTGTACTTAGCTCAAGCTCTAGATTATTGCACAAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTATAGAATCTTGTTTGACCAGGATGGTAATCCTAGGTTGTCTTGCTTTGGCCTCATGAAGAACAGCAGAGATGGCAAGAGCTACAGCACTAATTTGGCTTTCACCCCTCCTGAGTATCTAAGGACCGGGAGAGTGACAGCAGAGAGTGTGGTTTATAGTTTTGGAACATTGTTGCTTGATCTCTTGAGTGGTAAACATATTCCCCCAAGCCATGCACTTGACCTGATAAGGGGGAAGAATTTCTTGATGTTAATGGATTCAGCATTAGAGGGACACTTCTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGGCTTCTCGTTGTTTGCAGTATGAAGCTCGTGAGAGGCCAAATGCTAAGTCTCTTGTTGCTTCTCTCATCTCACTTCAGAAACAAACTGAGGTTCCTTCACATGTTCTGATGGGTTTGAAGAATGAAAGTGAATTATCGTCAACAAAGCAAATGCCATTGACACCTTTTGGGGAAGCTTGTTTAAGAGTGGACCTTACTGCCATACATGAAATATTAGAGAAGACTGGTTACAAAGATGATGAAGGAATTGCCAATGAGCTTTCATTTCAATTGTGGACCAGTCAAATGCAGGAGACGTTGAATTTGAAGAAGCATGGAGATACTGCTTTTCGAGCTAAGGACTTTCTCACTGCCATTAACTGCTATACTCAATTCATAGATGGAGGAACAATGGTATCACCAACAGTGTATGCAAGGAGGTGCTTATCATATTTGATGAATGAGAAGGGAGAAGAAGCATTAGCAGATGCAATGCAAGCCCAAGCAGTGTCTCCAGAATGGCCCACTGCTTTGTATCTCCAAGCAGCTTGTCTCTTCACCCTTGGAATGGAAACTGATGCTCAACAAACTCTTAAGGATGCCACTAACATGCAACCCAAATCAAACAAAATTTGTACATAA 1056 0.4252 MDAGETQPMKWAMRLRVALYLAQALDYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVASLISLQKQTEVPSHVLMGLKNESELSSTKQMPLTPFGEACLRVDLTAIHEILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFLTAINCYTQFIDGGTMVSPTVYARRCLSYLMNEKGEEALADAMQAQAVSPEWPTALYLQAACLFTLGMETDAQQTLKDATNMQPKSNKICT 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121305g00003 351 FunFam probable serine/threonine-protein kinase At4g35230 242 351 - -
Stsc121305g00003 351 FunFam probable serine/threonine-protein kinase At5g41260 2 184 - -
Stsc121305g00003 351 SUPERFAMILY Protein kinase-like (PK-like) 8 177 IPR011009 -
Stsc121305g00003 351 Pfam Protein kinase domain 17 165 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121305g00003 351 ProSiteProfiles Protein kinase domain profile. 1 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121305g00003 351 Gene3D Tetratricopeptide repeat domain 238 350 IPR011990 GO:0005515
Stsc121305g00003 351 SUPERFAMILY TPR-like 245 346 IPR011990 GO:0005515
Stsc121305g00003 351 Gene3D Transferase(Phosphotransferase) domain 1 1 185 - -
Stsc121305g00003 351 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 5 347 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121305g00003 Stsc-Chr121305 21323 24680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121305g00003 8 167 Glycoside Hydrolase AT3G07070 34.595 4.35e-21 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Stsc121305g00003 Pkinase 6.7e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121305g00003 - - gmx:100814477 631.328