Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121305g00002 ATGGGAGCTCGTTGCTCTAAATTCTCCTTTTGCTGGTTCCACACCCACCTCAAACCATGTGTCCTTGAATCCCCCGACCAAGAAAAAGGTGGAAAGAGTGAGAAGGAGTTGTGTCGGAGGTTTGGTGAGTTCAGATTGGAGGAACTGAAGGGTGCAACAAACGGTTTCAGTTCGGAGAACATAGTGTCGGAGCATGGAGAGAAGGCACCCAATGTGGTGTACAAAGGGAAGCTTGAGAATGGAAGTTGGATCGCCATTAAACGCTTCAACAAGTTTGCCTGGCCAGATTCTCGCCAATTCCTTGAAGAAGCAAAGGAAGTTGGGAGCCTTAGAAGTGAACGTTTGGCGAATTTGATTGGTTATTGCTATGAAGGAGAAGAGAGGCTGCTTGTGGCTGAGTTCATGCCCCATGAAACACTCGCCAAGCATCTCTTTCATTGGGAGACACAGCCAATGAAATGGGCAATGAGGTTGAGGGTGGCATTGTACTTAGCTCAAGCTCTAGATTATTGCACAAGTAAAGGAAGGGGTTTGTATCATGATCTCAATGCCTATAGAATCTTGTTTGACCAGGATGGTAATCCTAGGTTGTCTTGCTTTGGCCTCATGAAGAACAGCAGAGATGGCAAGAGCTACAGCACTAATTTGGCTTTCACCCCTCCTGAGTATCTAAGGACCGGGAGAGTGACAGCAGAGAGTGTGGTTTATAGTTTTGGAACATTGTTGCTTGATCTCTTGAGTGGTAAACATATTCCCCCAAGCCATGCACTTGACCTGATAAGGGGGAAGAATTTCTTGATGTTAATGGATTCAGCATTAGAGGGACACTTCTCAAAGGATGATGGAACTGAGTTGGTTCGTTTGGCTTCTCGTTGTTTGCAGTATGAAGCTCGTGAGAGGCCAAATGCTAAGTCTCTTGTTGCTTCTCTCATCTCACTTCAGAAACAAACTGAGGTTCCTTCACATGTTCTGATGGGTTTGAAGAATGAAAGTGAATTATCGTCAACAAAGCAAATGCCATTGACACCTTTTGGGGAAGCTTGTTTAAGAGTGGACCTTACTGCCATACATGAAATATTAGAGAAGACTGGTTACAAAGATGATGAAGGAATTGCCAATGAGCTTTCATTTCAATTGTGGACCAGTCAAATGCAGGAGACGTTGAATTTGAAGAAGCATGGAGATACTGCTTTTCGAGCTAAGGACTTTCTCACTGCCATTAACTGCTATACTCAATTCATAGATGGAGGAACAATGGTATCACCAACAGTGTATGCAAGGAGGTGCTTATCATATTTGATGAATGAGAAGGGAGAAGAAGCATTAGCAGATGCAATGCAAGCCCAAGCAGTGTCTCCAGAATGGCCCACTGCTTTGTATCTCCAAGCAGCTTGTCTCTTCACCCTTGGAATGGAAACTGATGCTCAACAAACTCTTAAGGATGCCACTAACATGCAACCCAAATCAAACAAAATTTGTACATAA 1485 0.4397 MGARCSKFSFCWFHTHLKPCVLESPDQEKGGKSEKELCRRFGEFRLEELKGATNGFSSENIVSEHGEKAPNVVYKGKLENGSWIAIKRFNKFAWPDSRQFLEEAKEVGSLRSERLANLIGYCYEGEERLLVAEFMPHETLAKHLFHWETQPMKWAMRLRVALYLAQALDYCTSKGRGLYHDLNAYRILFDQDGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLMLMDSALEGHFSKDDGTELVRLASRCLQYEARERPNAKSLVASLISLQKQTEVPSHVLMGLKNESELSSTKQMPLTPFGEACLRVDLTAIHEILEKTGYKDDEGIANELSFQLWTSQMQETLNLKKHGDTAFRAKDFLTAINCYTQFIDGGTMVSPTVYARRCLSYLMNEKGEEALADAMQAQAVSPEWPTALYLQAACLFTLGMETDAQQTLKDATNMQPKSNKICT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121305g00002 494 FunFam probable serine/threonine-protein kinase At4g35230 385 493 - -
Stsc121305g00002 494 SUPERFAMILY TPR-like 388 489 IPR011990 GO:0005515
Stsc121305g00002 494 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 22 490 IPR045845 GO:0004672|GO:0009742
Stsc121305g00002 494 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Stsc121305g00002 494 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Stsc121305g00002 494 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121305g00002 494 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Stsc121305g00002 494 SUPERFAMILY Protein kinase-like (PK-like) 42 319 IPR011009 -
Stsc121305g00002 494 Gene3D Tetratricopeptide repeat domain 381 493 IPR011990 GO:0005515
Stsc121305g00002 494 Pfam Protein tyrosine and serine/threonine kinase 73 310 IPR001245 GO:0004672|GO:0006468
Stsc121305g00002 494 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121305g00002 Stsc-Chr121305 20041 24680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121305g00002 26 310 Glycoside Hydrolase AT3G07070 33.968 1.08e-41 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Stsc121305g00002 PK_Tyr_Ser-Thr 3.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121305g00002 - - gmx:100814477 901.738