Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121304g00001 ATGGAATCATCGTGTGTCCCACCCGGGTTTCGGTTCCACCCAACGGATGAAGAGCTTGTTGGTTATTATCTGAGGAAGAAAGTAGCATCTCAGAAGATTGACCTTGACGTTATCAGAGAGATCGATCTGTATCGTATTGAACCCTGGGATCTGCAAGAGAGATGTAGGATCGGGTATGAAGAGCAGAAGGAGTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCGACGGGGACTCGAACAAACAGAGCGACGATGGCAGGGTTCTGGAAGGCCACGGGAAGAGACAAGGCGGTGTACGATAAGTCGAAGGTGATTGGGATGAGGAAGACTCTGGTGTTCTACAAAGGAAGAGCCCCTAATGGCCAGAAAACCGATTGGATCATGCATGAGTATAGACTTGAATCTGATGAAAATGGAGGAGCCCCTCAGGAGGAAGGCTGGGTTGTTTGTAGAGCATTCAAGAAAAGGACAACAACGAACGTGCAAACGAAGAGTATGGAAGGATGGGACTCAAGCTACTTGTATGAGGAAGCAAGCGGCGGCGGGGTTGTTGAGTCAATTGAGCAGCTGCTGTCAAGGCAGGGCGGTCATCATCATCAAAGCAGCTTCATGTGCAAGCAAGAGATTGAGAACATGCACGCAAATGCAAATGCAAATGTAGCATCCTCAGACCATCAATTTATACAGCTTCCACAGCTAGAGAGCCCAACTTTGCCGATACTTAAGAGGCCAGCAAGCACACTGCCAAATCATAACACTAGTAGCAACAAAGTAGTCACGACTGATTGGAGGGATCTTGATAAGTTTGTTGCATCTCAACTCAGTCATGGAGGAGGAGGAGACACTAGTAGCCACCAGACCCTCCCAAGCTTTATGGATAATAATAACAACCCGGACATGTCGTTGCTGCAGCTTCTGCAAACTAGTAGTGGAGACAACAACAATGAAGGGAACAAGTTGATGATGAGCATGACCCCCTTTCTAAACACAACCTCTGACTGTGATATTGGGATATGCGTCTTCGAAAATTAA 1035 0.4705 MESSCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQERCRIGYEEQKEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKSKVIGMRKTLVFYKGRAPNGQKTDWIMHEYRLESDENGGAPQEEGWVVCRAFKKRTTTNVQTKSMEGWDSSYLYEEASGGGVVESIEQLLSRQGGHHHQSSFMCKQEIENMHANANANVASSDHQFIQLPQLESPTLPILKRPASTLPNHNTSSNKVVTTDWRDLDKFVASQLSHGGGGDTSSHQTLPSFMDNNNNPDMSLLQLLQTSSGDNNNEGNKLMMSMTPFLNTTSDCDIGICVFEN 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121304g00001 344 FunFam NAC domain-containing protein 15 160 - -
Stsc121304g00001 344 Pfam No apical meristem (NAM) protein 7 134 IPR003441 GO:0003677|GO:0006355
Stsc121304g00001 344 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Stsc121304g00001 344 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Stsc121304g00001 344 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Stsc121304g00001 344 MobiDBLite consensus disorder prediction 275 296 - -
Stsc121304g00001 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 242 - -
Stsc121304g00001 344 MobiDBLite consensus disorder prediction 277 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121304g00001 Stsc-Chr121304 13126 16896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121304g00001 1 344 NAC Transcription Factor Family AT2G18060 58.021 2.68e-145 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc121304g00001 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121304g00001 - - aprc:113869508 463.381