Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121301g00003 ATGTCAATGCAACCTCCTAAGGAAGTAGCTTCTTCTGCTGCAAATCTCAACATGCTGAACCTTCCAACACAACAATTCATGAATGGTTTGCCGCCACCGCAAAGAAATATTCCTCCAATCTATGTATCCGGAGTTTCGGCTCAGAGGTTGAAAGAATTTATCCACAGGCAGCAGTGCCGGCCGGCCGACAACAACATTAATTTCTGGAGGAACTTTGTGGCTGAGTTTTTCGCTCCTAATGGAAAGAAGAAGTTCTGCTTCTCCTTGTATCCGAGACTAAAAAACCCAGCCAGTTTTTTCCTCAGTGATATGAGCACATGCCAGGCATGCAGGAGGAATCCCTGTAATGGTTTTGAACTGTGTTACGAGGTTCTTCCAAGGCTTTTCAAGATGAAATATGAAAGTGGACTATTGGAAGTGAATCTTTTTTTGGACATTCCCAGAGAATACAGAGACCCTACTGGCCACATTGTTCTGTTCTGTTCAAAGGTAACAAGAGAAAGCTTGTTCCACAAGTTTCGCGTCGTCCACAAAGGTTCCCTCCGAATAGTCTTCTTCCCTAACCTCAAAATACGCTCTTTGGAATTCTGCGCGAAGCGCCACGAAGTGCTCATGTGCAGAAGCTATTTGGTTCCTGATGTGAATCAGATTGATGATGCTGTTTCGAAGTTCTGTGATTTGGTAGCCAATAATATTAACAACAACAATGTTTCTGCTGAGGAGTTTGGAGAATGTAGCAATAACTTGGTTGCAAGAACACAGGAACTGGCTAAGAAGTTGGAAGTTCCAATACTTGATGAGTATGTAGGGTTTGCTAAGAGCTATGTTAGGTGCCTACAAATATCACAAGTTGGGAACAACATGAAAGACTTGATTGATTTCACCATAGTGAATGGGACTGGACCTATTGAGAGCTTAGATAGGTTCCAAAACAGAACTGGAATTGTTGATCATGGTGAAGATCAATTGCAGCAGCAAAATGGGGATCATGCTTTGAATAATGGTGCTGAGAACAATGAACAAACACCTGGCGTGCAAATTGGTTCTTCTAGGAATGGTAGGAATGGTACTTCAGCCACCACAAGCACTGTTCAGATTCATAATCATGTTGATTATGGGGCTCCAAATTCAGAAAACAATGAAGACAATGCTCATATTCAATCCCAAATTCCCTCAGGTAACAGAGGTAGGGGCATGCGCGACTAG 1206 0.427 MSMQPPKEVASSAANLNMLNLPTQQFMNGLPPPQRNIPPIYVSGVSAQRLKEFIHRQQCRPADNNINFWRNFVAEFFAPNGKKKFCFSLYPRLKNPASFFLSDMSTCQACRRNPCNGFELCYEVLPRLFKMKYESGLLEVNLFLDIPREYRDPTGHIVLFCSKVTRESLFHKFRVVHKGSLRIVFFPNLKIRSLEFCAKRHEVLMCRSYLVPDVNQIDDAVSKFCDLVANNINNNNVSAEEFGECSNNLVARTQELAKKLEVPILDEYVGFAKSYVRCLQISQVGNNMKDLIDFTIVNGTGPIESLDRFQNRTGIVDHGEDQLQQQNGDHALNNGAENNEQTPGVQIGSSRNGRNGTSATTSTVQIHNHVDYGAPNSENNEDNAHIQSQIPSGNRGRGMRD 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121301g00003 401 PANTHER LIM DOMAIN-BINDING PROTEIN 24 380 IPR029005 -
Stsc121301g00003 401 MobiDBLite consensus disorder prediction 326 401 - -
Stsc121301g00003 401 MobiDBLite consensus disorder prediction 326 394 - -
Stsc121301g00003 401 Pfam LIM-domain binding protein 49 307 IPR029005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121301g00003 Stsc-Chr121301 21388 22593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121301g00003 37 314 C2H2 Transcription Factor Family AT1G43850 50.360 1.63e-87 281