Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121300g00008 ATGAAGAAAGCTGGAGAGCTCCCTTGTCGAATGACTCGTGCTCGAGCTGCTGCATTTCGAGCATTAGGACAGCTTCCACCACTGAAGGAACCAGCACAGCACCGGAATCAGAAGCCGCGAGCTAATCCGAAAAGACCAGTTTCGGATAATGCATGTCCTCAGCGAAAGAAGAGGGCTGTTCTTCAGGATGTTACTAATGTCTTCTGTGATAATACATACAGAAGCTGTTTCAATTCAACTAAAATTCAGGGTAAGAAGAGTAAGCTGGATAAGGCTAGTCGAATCGATGTTTCCAAAGTGGCGCCTTCTGCTGCTGAGCAACATGTTCAAGTTCACTGCAAAACAAAGAGTTTTCCTGAACCAGGTCATGAATCAGAAGATGCAGCTTGTTCAATTAATGCAGAAAACAATGCACTCATAAGGCTTAGTCCTTTTGCAGTTGCATTAAGAGATCCAGAGATTGCTAACATAGATGATGATAATGAAGATTCTCAGCTGTGCAGCCTCTATGCTACTGATATCTATAACAGCTTGCGAGTTTATGAGCTCGCAAGACGGCCGAATCCTAACTTCATGGACACAAAGCAGAACGACATTACTCAAAGCATGCGCGGGATACTGGTTGATTGGCTTGTAGAGGTTTCTGAGGAATACAGATTGGGACTAGATACTCTTTATCTCACTGTGTATCTCATAGATTGGTTTCTCTCTAGAAATTACCTTGAAAGAGAGAAACTTCAGCTACTTGGGATCACTTGCATGCTAATCGCCTCGAAGTATGAAGAAATTAATGCCCCGCGAATCGAAGATTTTTGCTACATCACAGATAACACATACACAAAAGCGGAGGTACTGAAAATGGAGAGCCAAGTTTTAAAATCTTCTGGATATCAGCTTTTTGCTCCCACTACAATAAGTTTCCTCAGGAGGTTTCTCCGAGCTGCTCAAGCATCATACAAGAGTCCGAGCCTCGAATTGGAGCACTTGGCCAACTATCTAGCTGAACTAACATTGATGGAATATAGTTTCTTGAATTTCCTGCCATCTACCATTGCTGCATCTGCTGTGTTTCTTGCCAAATGGACATTGGATCAGTCAAAACATCCATGGAATCCAACTCTTCAACACTATTCTTGTTACAAAGCATCAGATTTGAAAGCCACAGTTCTTGCATTACAAGATCTGCAGCTAAACATCAATGGAATCCCTCTAACTGCGATTCGCTCCAAGTACAGTCAAGACAAGTTTAAATGTGTAGGGACCTTGTCTCCACCAAAACTACCTGAAACTATGTTCTGA 1299 0.4249 MKKAGELPCRMTRARAAAFRALGQLPPLKEPAQHRNQKPRANPKRPVSDNACPQRKKRAVLQDVTNVFCDNTYRSCFNSTKIQGKKSKLDKASRIDVSKVAPSAAEQHVQVHCKTKSFPEPGHESEDAACSINAENNALIRLSPFAVALRDPEIANIDDDNEDSQLCSLYATDIYNSLRVYELARRPNPNFMDTKQNDITQSMRGILVDWLVEVSEEYRLGLDTLYLTVYLIDWFLSRNYLEREKLQLLGITCMLIASKYEEINAPRIEDFCYITDNTYTKAEVLKMESQVLKSSGYQLFAPTTISFLRRFLRAAQASYKSPSLELEHLANYLAELTLMEYSFLNFLPSTIAASAVFLAKWTLDQSKHPWNPTLQHYSCYKASDLKATVLALQDLQLNINGIPLTAIRSKYSQDKFKCVGTLSPPKLPETMF 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121300g00008 432 SUPERFAMILY Cyclin-like 162 298 IPR036915 -
Stsc121300g00008 432 SUPERFAMILY Cyclin-like 302 426 IPR036915 -
Stsc121300g00008 432 PIRSF Cyclin_A_B_D_E 3 431 IPR046965 GO:0016538|GO:0044772
Stsc121300g00008 432 FunFam Mitotic cyclin 6 187 287 - -
Stsc121300g00008 432 SMART Cyclin_C_2 302 425 IPR004367 -
Stsc121300g00008 432 Pfam Cyclin, C-terminal domain 302 424 IPR004367 -
Stsc121300g00008 432 Pfam Cyclin, N-terminal domain 173 294 IPR006671 -
Stsc121300g00008 432 CDD CYCLIN_AtCycA-like_rpt2 302 416 - -
Stsc121300g00008 432 Gene3D - 187 300 - -
Stsc121300g00008 432 FunFam Cyclin A1 289 421 - -
Stsc121300g00008 432 MobiDBLite consensus disorder prediction 24 55 - -
Stsc121300g00008 432 Gene3D - 173 421 - -
Stsc121300g00008 432 SMART cyclin_7 209 293 IPR013763 -
Stsc121300g00008 432 SMART cyclin_7 306 394 IPR013763 -
Stsc121300g00008 432 PANTHER CYCLINS 124 413 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121300g00008 Stsc-Chr121300 31171 34596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121300g00008 11 432 Core Cell Cycle Gene Families AT1G80370 54.875 1.77e-156 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121300g00008 K06627 - gmx:100793657 595.119