Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121299g00004 ATGGACCAACACCACTCCCACTACCTTCACCACCACCACCACTACACCCACTATCACCACAACAACCACCACAACAGCAGCAGCAGCAACAACAACAACAACAATCGCACCAGGTACGCCCCTCCCCCTCCTCCTCACAACCACAACCACAACCACAACCACCTCCCTCCGCCGCCTCCCCTGCCACCCTCCGTCCACCCTCCGCCAGCCCCTCCTCCCCAAGCACAACCCCCCCGCTACCGCACCATCCGCACATCTCCTCCTCCTCCTCCCCCTCCCTATACTACCAGTAACAACCACCCCCCATCCCATCAAAACCAATTCCCCCAATTCAATTCCCCTAACTACCCTAACCGTCCCTTCCAAGAAGAACGCCCAATCTCCAACAACCATAGTCAGCAATTTTCCCAATCCCCCAGGATTTCCAGCCGAATCCTCCCTGACGATCCCCTCCCCCGCCGCAATTTGCCCACTTTCGACACCGAAACAACCTGGAACCCTAAACCTGGCCGTAGGGTTGCTCCCGACTCTCGCCCCTCAAGGAATTATACCCCGGTTGATCTCGACAGCGAATTGCGCCATCATCGCGAAGGGGTCCCGCTGCCGCCCCCGCCATATCCGGTCGAAAAGATTCGGTACGATACTGATCGCCGGAGCTCCAGGTTGAGAATTGAGTATGAGGGAAACCCTAGGGAGGATGAGGACTTTGGGTTGGGCCGCGGCAAGGATGCTAATTACCACCATTACCACCGCCGCGGCGTTGGGGATTTGCCACCCAGACGCGATTTGCCCGACGGAGGCTTTGGAATGGCGCCATCGGCGATGTCAAGGGAGGTTGACTTTAATTTGAAACCTGGGGGTTATGTTCGCGGTTCTAGTGAGGAATTCGATGGTGAGGTTCCAAGGGTTGGAAGAAGAGATGTGCATGGCGAAGGCAAGAGGTGGTTGAATGAGAAGAAGGGACCTAGGGAGTTGCCTGATTCACAATTCGAATTGGGGAACAGAGAGTTTGGTTCTGCTGAGACTGGTGATGATTTTCGCCCTGGGAAACGTGAGTATTATGGATGGGAATCGGGTAGGTATAGTGGCAGAGGGAACAGCAGGGAGCTTGGTCATGAAGTTTGGCGAACACCGCCAAAGAAACAGATTCAAAAGAAGAGTGCTCTTCTTAGGATCCAGAATGCGAAACCGAGTTATAGGAATCGGGAGCTTGAACAATTACGGAATGCTGGTTATTCTGCTGAGTCTAACTCTAATATCTTCAAGGGCAAGGAGCAGTGTGGGCATGTGGGTCATGGGATGAAACAAGAAGAAAGGGAAGGAAGCCCTGTGGAGCTTGATATCTCATTTGAATCAAATTCCTTGGTGGCCAAGGCTATTGTGACCACTTTGGCTTCAACTGTTGTTACTGATGTAAATATGAATTCTGTCTCTGATGCTGATTTGACTCACTCAGAAAAGAGAAAAAAGGTTTCAGTATCTGATAGTGATTGTTCTGGTTTGGAAGCTGCAAAAGTATCTACTGATGTTGTAAATTTGAATAGCTCATCATGCAAAGTGAATGACTCCTCTGGATCTGTGAAGGATTTAAGCTTACAGAAGAATGTTGTTAACCCTTGTTCTCAACCTTGCACCAGTGTGAACGGTAATCCTCGTGGGAAAAATGAGGTTGCAGGTGGAATTGCCAAAATTTGCTCTGGTAAATCCTCCCCAAGGATTGTCAAGAAGAAAAAAGTTGTCAAGAGAGTAGTGAAGAAAGTTGTTGGAAATAAAAAATCTGCATTGTCAAATTCACCATCAGCAAATAAGGTACATGGTCGTGTGCAACCTGATCGAGTCACACCTAGTTCTACATCTGCCTCTGTTCCCAACAAAGTTGAACCTTGTTCGAAGCAGAAAAACATCAGTTTAGACAAGGTGTCAATGCCTGGTAATAGTTCATACAATTTATCAAAGGAAGGGAATCCATTGCCTGAAGGTAGAAATGGAGATCCATCCCAGCTGAGTTTGGGATCACATTCCAGGTCACAACAATACGAAACTGATGAAGATTCTTATACTGGGAAAGGAGCCAGGTTTGAAAGTGGTCTTAACATTTCAAATTCTCAATCTTGTGCATCTATTTGTGAAGCTAAAAAGATTGATTCTGACTGTTTAGATGCAAATAATTCTGTCCATGACTTGTGTAGCAAGCTAGATACTAACATGGTTCCTGAATCATTAAATGGAAGTACTTCCAAAATCATTGATATGGGTTGTGCTATTAAACAGTCATGTCAGAATCAAGAGTCTCAATCATGTGAGAATGATTCAAATGTAAGATGCCCAGAAAATAGGTTTGTTATAGATGTAGATGATAGATTACTTAGTTCAGCTGACAATATTGGTAACTCAGCTCACACTAATGCATGTAACTCTGCCAGTAGTGTTTATGGCTTGAATTGCGGTGATCTTACTGGATCAAAAGAGAAGCTTACAGTTACTGACAGTGGTGTTATGGGAGAATCTTGTTTTGAACCTATGGACCCTACTATTATCACCAAGTATGCTATTTTGGAAGAAAATCCAGATGCAATCAACCCTGTATCAAGCAGTGGAATGTCTTCCTTTTCAAGTCCAGAAAAAATTAGGATTCAAGCTGATCCAGATTGCATACAAAATGCTAGTGCTGTGAAGCAGGGTTCTTATGGTGGACCAGTCAATTCAGGTGAAGGTACCTCTGTTCAGTGTTCTGACATCACTAATGATGCTGTGAAGCATGTTTCCCCCAGTAATGCTGCCATATCTTCTGAGAGTTGTGGCAAGGAGGAGTTATTTTCAAGTTCTGATATTTCAGTTGGATTTGGTGAAGGGGATACAATCAATATGAAAAAGAGAAAAAATAGGACTCATTTAAAGTCTTTGTGCTCAAAGATGGAGGGAATTTCTCCAAAACCTGTAAATCCAGTTAGCCATGCAAATGATTTGGATACTGTCTCAAGTATGAAGGTGAAGCATACATGTCCTTCAGAAGTCTTGAATCAATCTATTCAAAGCTTAGATTCTAACCTGGAATCGTGCCTGGATGGGATCATTACTTTACACAGGGAAAAGGAGCTTTCAGAGGGTGAGCTTTGTGTTAGAGGTAATGAGATTGATGATGCAAATTATCTTTCACCATTTTCTAAAAGGATAAAAGTTACCACTAACAACCTAAATTTTACTCATTGTCAATCTGAGTTGAGTGATGAAGTTGTGGTTTCCAAATCTTCTGCTGATTTTCCTGTTTGTTTAATTGATAAACAAGCACCCCAGAAAGGTGTTGCATTGTCAAGCATGGATATTCTGTGTAGTGGTCAATCATTGCCTTGTTCAGAGGATAGTAGGAAATTGTCTGGCAATATTTTTGTTGGAAGTTCTTGTGAGACTAGATATGCAAATAATGAAACCATGTGTTTTGACCATTTGGAATTAAAGAACCGAGATTTTGCATCTAATTTGCTTCGTGAGGACTTAGACATTCAGTTTTCATTGTTGGATGGTGAATGCAAAGAGAATGGTTCTCAAATGGTGTCTTTATGTAATACTCAAACCGACATTTTTGTGTCTGGAAATACTGAGGGAGGTATGAAGGATAATTTAATTCATCAGCAGAGCATTGTGTCCAGTCCTGCTAATGGTGATGGTGTTACCACTTGTAATTCCAATGGTGATATGGAGGAGGATATACCTGAAGCACCATCAGATGTGTGTTCTCAAGGGGTGATATCTGATGTACCTGAGAGAGGGAATCTAAATTGTACAGCCATCCAAGATGAAAAAAATTGTGGGAATATATCTGCAGTTGAACATGGTTCTGATTTGCCTACTTGTACTTCAACAGTGCAGCATCCTGATAAGATTATGAAGTCAGCTAATGCAACTGGGCATGGTAACCCAGTCATGAGGAATCTAATGCAACAACCATCCCAAATCAGCTCTCAGGTATCAAACAATGGTCCATTTCCTTATTTTCCAGAAAATGGGATAAAAAATAAACTCGGAGGTGTCTTGCCAAAACCTCAAAAGGGTCATTCTTTCAACTTTTCAAAATCAAATACAAAGACATCTGCCTCTTCATCCCATCTTTCAAATCCTCGAACATGGCGTCGTTCTGGTAATAATTCTCAAGCTTCTGTACCTGGAAACAAGCTTTCAGTAGGAGCACTTCCTCCCAAAAGGCAAAATCTAGATAGGAAAGGGAACTTTCAGAATGCCTCTTACGTTCGTAAAGGTAACAGTCTCGTAAGGAAACCTACTACAGCTTCTTCAGCTCAAATTTCTTCTGTAAATAGGTCACCTTTGAGCTTAGATGAATCATCAGAGAGTACCAGATTTGAAAGCAGGATTGATGCGACAGATCAACTGACTCTGAAAACAGGAGTAGCAGAGGTCCATCAGCAGAGTCAAAGAAAACCTTCGTTATCCATTGGCAGTGTCTCAGAGGAAAATATGTCTTCCCCATTGGAAGAACCTCCTTCCACTGGTTGCTGTGAAAGTGCAACAGATGATAAAAAACTGGTTGATATTAATGATGGACCAAACACTTCTAAAGCTTGTTCAAATCAGTATGAAACTCCTGATAATCAAAGTAGTCCACTAAGTGAGTTGGAGAGCCAAGTTGAAGCAAATGATGGAAATATTTCCTCTTTCAGCAACAAGAAAATAGTATATACAAAGCCCAAAACAAATCAATTGATAGCAAATTCAAATCATCGTGATGAGAAGTCCCAAACAGCCTTCTCTGATGGCTACTACAAGAGGAGCAAAAACCAGTTAGTTAGGACTATGAACCAGACTGTTGCAGTGCTCAATACAACTCTGGATTCTGATGGTCAGGGGTCTTGTAAGGTTCTTTGCAACAGAAAGTTTAGTAAGAGGCAGTTACATAAAGTTTCTGGGAGTTCATTCAAATCTTTAAGAGCCTCATTAGTCTGGACATTGTGTGGCAAAAATTCACATAAAATTGGCCACAATTCATGGCATTGTCAAAAGGTTTTGCCTCACTTATTTCCATGGAAAAGAGCAACATATTTAAGAAGCATCGTTCATAATTCTGCTTCAAGTTCCAATAGTGGTTCCTTATCTGCAATCAGTTTAAAGTGGTCCAAATCCATTGAGAAGAACTCAAAGCAAGCTAATGAGGAGGCCACACTAGCTGTTGCTGCAGTAGAGAGGAAAAAGAGAGAGCAAAAAAGTGCAGCTTGCATTGGTTCCCATGCAAAAAGAGAACGTATATTCCGTATTGGATCAGTTCGCTACAAGATGGATCCTTCCAGGCGCACGCTTCAGAGGATTTCAGATGATGAATCCCTGTCCTCTGCCACTACTGATTCGGGCATGGCTGCCAAAAGAGCTTACATTCCTAGGAGACTGGTGATTGGAAATGATGAATATGTCCGAATTGGAAACGGTAATCAGCTTATCAGAGACCCAAAAAAGCGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCATACTGCCAGACAACGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTTACTAGATTTGGGAAATGTAACAAGGAGGGCGGGAAATGCCCTTATATTCATGATCCCTCAAAAATTGCCGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTGACTCATAAGGTTATTCCAGAGAGAATGCCAGATTGTTCTTATTTTCTGCAAGGCTTATGCACAAATCGAAATTGCCCATATAGACATGTCAATGTGAACCCCAAGGCTTCTGTTTGTGAAGGATTTCTCAAGGGTTATTGTGCTGATGGGAATGAGTGTAGGAAGAAGCACAGCTATATCTGTCCTACTTTTGAAGCAATGGGCACCTGTACAAAAGGAAACGAATGCAAGCTTCATCATCCCAAAAAACAAAAGGGAAAGAAAAGGAAGAGATCTGGAGATCAGAGTTACAGCAGAGGGCGCTACTTTGGTTCTGTTCTGAATGATGATTCTGAAGCCGGGATGGTAGTTATTCCAGGGCAACCTGGTCAGAATGATGCTCTTGAAGGAGAACTTTCTGACTACATCAGTATTCGGGATTACTATGAACCCACAAATTCTGCCGGTCAATCATTAGTGCAAGCATTATGCGACAGTGATTCCTTGGACTCACAGTTGGAAGATTATGAAGTCAAACCAATTCTTTTAATGAAAACAGACAGCACACTGCAATCTTCTCGGTCTGGCATCCTGCAAAGCTAG 6255 0.4275 MDQHHSHYLHHHHHYTHYHHNNHHNSSSSNNNNNNRTRYAPPPPPHNHNHNHNHLPPPPPLPPSVHPPPAPPPQAQPPRYRTIRTSPPPPPPPYTTSNNHPPSHQNQFPQFNSPNYPNRPFQEERPISNNHSQQFSQSPRISSRILPDDPLPRRNLPTFDTETTWNPKPGRRVAPDSRPSRNYTPVDLDSELRHHREGVPLPPPPYPVEKIRYDTDRRSSRLRIEYEGNPREDEDFGLGRGKDANYHHYHRRGVGDLPPRRDLPDGGFGMAPSAMSREVDFNLKPGGYVRGSSEEFDGEVPRVGRRDVHGEGKRWLNEKKGPRELPDSQFELGNREFGSAETGDDFRPGKREYYGWESGRYSGRGNSRELGHEVWRTPPKKQIQKKSALLRIQNAKPSYRNRELEQLRNAGYSAESNSNIFKGKEQCGHVGHGMKQEEREGSPVELDISFESNSLVAKAIVTTLASTVVTDVNMNSVSDADLTHSEKRKKVSVSDSDCSGLEAAKVSTDVVNLNSSSCKVNDSSGSVKDLSLQKNVVNPCSQPCTSVNGNPRGKNEVAGGIAKICSGKSSPRIVKKKKVVKRVVKKVVGNKKSALSNSPSANKVHGRVQPDRVTPSSTSASVPNKVEPCSKQKNISLDKVSMPGNSSYNLSKEGNPLPEGRNGDPSQLSLGSHSRSQQYETDEDSYTGKGARFESGLNISNSQSCASICEAKKIDSDCLDANNSVHDLCSKLDTNMVPESLNGSTSKIIDMGCAIKQSCQNQESQSCENDSNVRCPENRFVIDVDDRLLSSADNIGNSAHTNACNSASSVYGLNCGDLTGSKEKLTVTDSGVMGESCFEPMDPTIITKYAILEENPDAINPVSSSGMSSFSSPEKIRIQADPDCIQNASAVKQGSYGGPVNSGEGTSVQCSDITNDAVKHVSPSNAAISSESCGKEELFSSSDISVGFGEGDTINMKKRKNRTHLKSLCSKMEGISPKPVNPVSHANDLDTVSSMKVKHTCPSEVLNQSIQSLDSNLESCLDGIITLHREKELSEGELCVRGNEIDDANYLSPFSKRIKVTTNNLNFTHCQSELSDEVVVSKSSADFPVCLIDKQAPQKGVALSSMDILCSGQSLPCSEDSRKLSGNIFVGSSCETRYANNETMCFDHLELKNRDFASNLLREDLDIQFSLLDGECKENGSQMVSLCNTQTDIFVSGNTEGGMKDNLIHQQSIVSSPANGDGVTTCNSNGDMEEDIPEAPSDVCSQGVISDVPERGNLNCTAIQDEKNCGNISAVEHGSDLPTCTSTVQHPDKIMKSANATGHGNPVMRNLMQQPSQISSQVSNNGPFPYFPENGIKNKLGGVLPKPQKGHSFNFSKSNTKTSASSSHLSNPRTWRRSGNNSQASVPGNKLSVGALPPKRQNLDRKGNFQNASYVRKGNSLVRKPTTASSAQISSVNRSPLSLDESSESTRFESRIDATDQLTLKTGVAEVHQQSQRKPSLSIGSVSEENMSSPLEEPPSTGCCESATDDKKLVDINDGPNTSKACSNQYETPDNQSSPLSELESQVEANDGNISSFSNKKIVYTKPKTNQLIANSNHRDEKSQTAFSDGYYKRSKNQLVRTMNQTVAVLNTTLDSDGQGSCKVLCNRKFSKRQLHKVSGSSFKSLRASLVWTLCGKNSHKIGHNSWHCQKVLPHLFPWKRATYLRSIVHNSASSSNSGSLSAISLKWSKSIEKNSKQANEEATLAVAAVERKKREQKSAACIGSHAKRERIFRIGSVRYKMDPSRRTLQRISDDESLSSATTDSGMAAKRAYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKEGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCTNRNCPYRHVNVNPKASVCEGFLKGYCADGNECRKKHSYICPTFEAMGTCTKGNECKLHHPKKQKGKKRKRSGDQSYSRGRYFGSVLNDDSEAGMVVIPGQPGQNDALEGELSDYISIRDYYEPTNSAGQSLVQALCDSDSLDSQLEDYEVKPILLMKTDSTLQSSRSGILQS 2084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 1404 1447 - -
Stsc121299g00004 2084 FunFam zinc finger CCCH domain-containing protein 3 1872 1923 - -
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 1970 1990 - -
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 1351 1389 - -
Stsc121299g00004 2084 ProSiteProfiles Zinc finger C3H1-type profile. 1946 1974 IPR000571 GO:0046872
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 1468 1552 - -
Stsc121299g00004 2084 Gene3D - 1869 1924 - -
Stsc121299g00004 2084 ProSiteProfiles Zinc finger C3H1-type profile. 1897 1923 IPR000571 GO:0046872
Stsc121299g00004 2084 FunFam Zinc finger CCCH domain-containing protein 7 1925 1986 - -
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 1520 1552 - -
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 99 143 - -
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 1339 1454 - -
Stsc121299g00004 2084 ProSiteProfiles Zinc finger C3H1-type profile. 1842 1871 IPR000571 GO:0046872
Stsc121299g00004 2084 Coils Coil 1720 1740 - -
Stsc121299g00004 2084 PANTHER CCCH ZINGC FINGER 1694 2070 - -
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 17 187 - -
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 38 98 - -
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 611 653 - -
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 22 37 - -
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 590 688 - -
Stsc121299g00004 2084 SMART c3hfinal6 1951 1973 IPR000571 GO:0046872
Stsc121299g00004 2084 SMART c3hfinal6 1924 1950 IPR000571 GO:0046872
Stsc121299g00004 2084 SMART c3hfinal6 1871 1895 IPR000571 GO:0046872
Stsc121299g00004 2084 SMART c3hfinal6 1897 1922 IPR000571 GO:0046872
Stsc121299g00004 2084 SMART c3hfinal6 1842 1870 IPR000571 GO:0046872
Stsc121299g00004 2084 Gene3D - 1925 1987 - -
Stsc121299g00004 2084 MobiDBLite consensus disorder prediction 1468 1499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121299g00004 Stsc-Chr121299 26357 36002 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc121299g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121299g00004 - - ahf:112706494 2962.94