Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121298g00003 ATGGCAGGAAGTGCAACTAACAAGGTTGCATTAGTATTTTTGGCTACTTTGGCCGTTGTTGTTCGGTGCATTGAAGCTAATGGGCATGTGGTGATTGATGATTATATCAAAAGACAACAGAGGAAGGCTTATGAACTTGCCCTCCAAACCTATGTCCCAAACCCTTTGGAAGTTGTACATGAACTCAACCATCACGTTCACCTAGTGGCGAACAAAACGGAATCAAGGAGGAATCTAATGAAGATAAAGACAAGGGACAGAAAAGCAGGGGTGTGCGAATACACAAACCCCATTGACGCTTGCTGGAGGTGCGACCCTAAATGGGCCGATAACCGCTACAAGCTGGCGGAGTGCGCCAAGGGATTCGGAAGGAGGGCCACGGGAGGCAAAGGGGGGCCAATCTACATTGTCACCGACTCGTCAGACGAAGATTTGGTAAACCCTAAACCTGGAACCCTAAGACACGCAGTGGTCCAGGACGGACCACTGTGGATTACATTTGGAAGAAGCATGGTGATCGAGTTGCAGCAAGAGCTGATCATCACCTCCGACAAAACCATCGACGGACGCGGCGCCAGTGTTTATATAAAGGGCGGCGCCGGGCTGACGATTCAGTACGTGAACAATGTGATTGTTCATGGACTTCACATCAAGGACATTAAGGCAAAACTTGGGGGCGTTATAAGGTCGAATTCACAGCATGCTGGTAGCAGGACGAGAAGTGATGGTGATGGAATCAACGTGTACGGCGCCACCAACATTTGGATCGATCATATCTCCATGTCTAATTGTGATGATGGCCTCATCGATGTTATTGAGGCTTCCACTGGCATCACCATCTCAAATTGCCACATGACCAGACACAATGATGTGATGTTGTTTGGAGCTGATGACACTCACAAGGAAGACAAGATCATGCAAATAACGGTGGTATTCAACCACTTCGGACAAGGATTGATTCAAAGGATGCCGAGGTGCAGATTCGGATTCTTCCATGTTCTAAACAACGACTACACCCACTGGCAAATGTACGCCATCGGAGGAAGCTCAAACCCAACAATTCTTAGCCAGGGCAACCGCTTCGTTGCTCCGAACAACGACGCCGCGAAGGAGATCACCCACCGCGGCGCTGTGAAGCCGGAGGTGTGGTCGAAGTGGCAGTGGCAGTCAGAGTATGATCTGCTTGAAAACAATGCACGGTTTGTTGAGTCTGGTGCTCCCATTACGAACCTACCATTCAACAAGGGACTCATCATGAAACCAAGAGATGGTTCTCATGCTGACAGACTCACTAACTATGCTGGTGCTCTTACTTGCATTGTTGGCAAACCTTGCTAG 1338 0.4888 MAGSATNKVALVFLATLAVVVRCIEANGHVVIDDYIKRQQRKAYELALQTYVPNPLEVVHELNHHVHLVANKTESRRNLMKIKTRDRKAGVCEYTNPIDACWRCDPKWADNRYKLAECAKGFGRRATGGKGGPIYIVTDSSDEDLVNPKPGTLRHAVVQDGPLWITFGRSMVIELQQELIITSDKTIDGRGASVYIKGGAGLTIQYVNNVIVHGLHIKDIKAKLGGVIRSNSQHAGSRTRSDGDGINVYGATNIWIDHISMSNCDDGLIDVIEASTGITISNCHMTRHNDVMLFGADDTHKEDKIMQITVVFNHFGQGLIQRMPRCRFGFFHVLNNDYTHWQMYAIGGSSNPTILSQGNRFVAPNNDAAKEITHRGAVKPEVWSKWQWQSEYDLLENNARFVESGAPITNLPFNKGLIMKPRDGSHADRLTNYAGALTCIVGKPC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121298g00003 445 SMART amb_all 170 367 IPR002022 -
Stsc121298g00003 445 Gene3D - 95 438 IPR012334 -
Stsc121298g00003 445 PANTHER PECTATE LYASE 18-RELATED 43 443 IPR045032 GO:0030570
Stsc121298g00003 445 SUPERFAMILY Pectin lyase-like 96 436 IPR011050 -
Stsc121298g00003 445 Pfam Pectate lyase, N terminus 32 79 IPR007524 GO:0030570
Stsc121298g00003 445 Pfam Pectate lyase 179 361 IPR002022 -
Stsc121298g00003 445 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Stsc121298g00003 445 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Stsc121298g00003 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Stsc121298g00003 445 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Stsc121298g00003 445 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Stsc121298g00003 445 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Stsc121298g00003 445 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Stsc121298g00003 445 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121298g00003 Stsc-Chr121298 19741 22994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121298g00003 9 445 Polysaccharide Lyase AT1G14420 55.211 2.20e-178 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121298g00003 K01728 - gmx:100810615 615.535