Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121298g00002 ATGTTGGCTTTCATGGTTGGTTCAAAACAAGCTTTTGAAGTGTCTTTAGCTGATGTCTCCCAGACACAGCTTCAAGGTAAAAATGATGTCCTCTTGGAGTTTCACGTGGATGACACAACTGGAGCCAATGAGAAAGATTCATTGATGGAAATAAGTTTCCACATCCCAAATTCTAACACGCAGTTTGTTGGTGATGAAAATCGACCTCCCGCACAGGTTTTCCGTGACAAAATCATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTCGTCACATTTGAGGGTATTGCAATCCTCACACCTAGGGGAAGATATAGTGTTGAGCTACATCTGTCATTCTTGCGACTTCAGGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTAGTTCGTCTATTTTTACTTCCCAAGTCTAATCAGCCACATACGTTCGTTGTTATTAGTCTGGATCCACCTATTCGGAAAGGACAAACTCTGTACCCTCATATTGTGATGCAGTTTGAGACTGATTATGTTGTTCAAAGTGAGTTGGCTATGAGTGAAGATCTTTACAACAGCAAGTACAAGGACAAGTTGGAGTTATCCTATAAGGGTCTCATCCATGAAGTGTTCACAACAATATTGCGTGGCTTATCTGGTGCCAAAGTTACCAAACCAGGAAAATTTAGAAGTTGCCAAGATGGTTATGCAGTAAAATCATCTTTAAAAGCTGAAGATGGAATTCTTTATCCCCTCGAGAAGAGCTTCTTCTTTCTACCTAAACCTCCAACTCTTATTCTTCATGAAGAGATTGACTATGTTGAATTTGAGCGGCATGGTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTGGTCAGACTAAAGTCTGATCAAGAGCATCTTTTTCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGGTTTCATCAGTTCAAAGGGATTGAAAATTATGAACTTGGGAGATGCCCAACCAGGATCTGTGGGTATGGCTAAGGTTCTTGAGAATGATGATGATGACGCCGTTGATCCGCATCTTGAGCGCATCAGAAATGAAGCTGGTGATGAAAGTGATGAGGAGGATGAAGATTTTGTTGCTGATAAGGATGATGAAGGCTCTCCAACTGATGATTCTGGAGGAGAAGATTCTGATGCTAGTATAAGTGGTGATGAGAAAGAGAAGCCTGCCAAAAAGGAATCAAAGAAGGAGATGCCTTCTAAGGCATCTACTTCGAAAAGGAAACCGAAAGATGCTGATGAAGATGGAAAAAAGAAAAAGCAGAAAAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTCATGTTCTTCTCCCAAATGGAAAGAGAGAATCTAAAGAAGACTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTCGGAGAGAAATGGAAAAAGATGTCAGCGGAGGAGAAGGAGCCATATGAGGCGAAAGCTCGTGCTGACAAAAAACGTTACAAGGATGAGATTAGTGGCTACAAGAATCCACAACCTGTGAATGTCGATTCAGGAAATGAGACTGACAGTGCTTGA 1575 0.4127 MLAFMVGSKQAFEVSLADVSQTQLQGKNDVLLEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVISLDPPIRKGQTLYPHIVMQFETDYVVQSELAMSEDLYNSKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHGAGGSNMHYFDLLVRLKSDQEHLFRNIQRNEYHNLYGFISSKGLKIMNLGDAQPGSVGMAKVLENDDDDAVDPHLERIRNEAGDESDEEDEDFVADKDDEGSPTDDSGGEDSDASISGDEKEKPAKKESKKEMPSKASTSKRKPKDADEDGKKKKQKKKKDPNAPKRAMSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSAEEKEPYEAKARADKKRYKDEISGYKNPQPVNVDSGNETDSA 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121298g00002 524 Pfam HMG (high mobility group) box 440 508 IPR009071 -
Stsc121298g00002 524 CDD HMG-box_AtSSRP1 436 511 - -
Stsc121298g00002 524 CDD PH1_SSRP1-like 90 223 - -
Stsc121298g00002 524 SMART hmgende2 439 509 IPR009071 -
Stsc121298g00002 524 CDD PH2_SSRP1-like 225 324 - -
Stsc121298g00002 524 SMART Rtt106_2 231 324 IPR013719 -
Stsc121298g00002 524 FunFam FACT complex subunit SSRP1 1 62 - -
Stsc121298g00002 524 MobiDBLite consensus disorder prediction 510 524 - -
Stsc121298g00002 524 MobiDBLite consensus disorder prediction 481 524 - -
Stsc121298g00002 524 Pfam Histone chaperone Rttp106-like 233 322 IPR013719 -
Stsc121298g00002 524 MobiDBLite consensus disorder prediction 358 382 - -
Stsc121298g00002 524 FunFam FACT complex subunit SSRP1 222 330 - -
Stsc121298g00002 524 Gene3D - 82 221 - -
Stsc121298g00002 524 FunFam Fact complex subunit ssrp1 82 221 - -
Stsc121298g00002 524 MobiDBLite consensus disorder prediction 389 431 - -
Stsc121298g00002 524 SUPERFAMILY HMG-box 427 509 IPR036910 -
Stsc121298g00002 524 Gene3D High mobility group box domain 423 517 IPR036910 -
Stsc121298g00002 524 MobiDBLite consensus disorder prediction 353 447 - -
Stsc121298g00002 524 Gene3D - 1 62 IPR038167 -
Stsc121298g00002 524 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 440 508 IPR009071 -
Stsc121298g00002 524 MobiDBLite consensus disorder prediction 481 505 - -
Stsc121298g00002 524 SUPERFAMILY PH domain-like 89 323 - -
Stsc121298g00002 524 Pfam Structure-specific recognition protein (SSRP1) 2 57 IPR024954 -
Stsc121298g00002 524 Gene3D - 222 329 IPR011993 -
Stsc121298g00002 524 FunFam FACT complex subunit SSRP1 424 517 - -
Stsc121298g00002 524 PRINTS Structure-specific recognition protein signature 299 317 IPR000969 GO:0003677|GO:0005634
Stsc121298g00002 524 PRINTS Structure-specific recognition protein signature 102 118 IPR000969 GO:0003677|GO:0005634
Stsc121298g00002 524 PRINTS Structure-specific recognition protein signature 147 163 IPR000969 GO:0003677|GO:0005634
Stsc121298g00002 524 PRINTS Structure-specific recognition protein signature 257 274 IPR000969 GO:0003677|GO:0005634
Stsc121298g00002 524 PRINTS Structure-specific recognition protein signature 212 225 IPR000969 GO:0003677|GO:0005634
Stsc121298g00002 524 PRINTS Structure-specific recognition protein signature 124 140 IPR000969 GO:0003677|GO:0005634
Stsc121298g00002 524 PRINTS Structure-specific recognition protein signature 283 299 IPR000969 GO:0003677|GO:0005634
Stsc121298g00002 524 PRINTS Structure-specific recognition protein signature 239 257 IPR000969 GO:0003677|GO:0005634
Stsc121298g00002 524 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121298g00002 Stsc-Chr121298 2541 6320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121298g00002 436 508 ARID Transcription Factor Family AT1G04880 39.726 1.66e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Stsc121298g00002 Rtt106 9.6e-20 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121298g00002 K09272 - gmx:100805034 912.138