Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121297g00002 ATGCTTATTGAGCACGTAAACAAGTATGGCGAAGGTAATTGGAGTTTAGTGCGAAAGAATTCTCAACTCATGAGATGTGGCAAAAGTTGTAGGCTTAGATGGTCAAATCATCTAAGACCTGATTTGAAGAAGGGTGCATTTTCTGATGAAGAGGAGAAAATTGTTGTTGATCTTCATGCTAAGTTTGGAAATAAATGGGCTCTAATAGCTAGCAAGCTTCCTGGAAGATCAGACAATGACATCAAGAACTTTTGGAACTCAAGAATGAAGAAGCAACTCAAAGTGAGTGTACCAAAAAATCCTCCAAAAATGGTTATTCAAGAACCAGAACGACAACACTTTTCTTCATCACCACCACCTCCATCATCATTTCATTCAGTTTTAGCTTCATGTTACCCCCAAAATAATCTCACTGTTGAACCACCACCCCCAATCATTTCTGCTCCAAATCCTCCACAAATTCATAATCAAAATTCTTCTTTTTCTTACACCAACAGCAGTGCAAGTTGTGTGCTGCCATTAGCCCCTATGTCTCCTTATTATAGAGCATCAACACGATCAACTTATTGTAAGAAAAATAGTGGTTTATTGAATGATGTGGTAATGGAGGGTAATTCCCTTCATGGCAAGGGCAAGTCAAAGATGGTTGAAAATGAAACCATTGCTATTGCTGGGAAAGAAGAAATTGTTGAAGGATGTGAAACCAGAAAAAATCCAACCTCTCCTCAAATGATTCCAACAGGAAAGAATAATCATGGAGCTTCTATGCCGCAATTGGACGATGAATTGATTAGGTTTCTTAAGGATTATCCATTATATTCGCCAGTGGAAAAGTGGTACCCAGAAGTGGGATTTGAAACTCAAGTTCATGATGAGGGCTTCACTATTGATGTTGATCAAGATTGGGATATTGGAAACATATGGAATATAGATGGATGGTAA 942 0.3822 MLIEHVNKYGEGNWSLVRKNSQLMRCGKSCRLRWSNHLRPDLKKGAFSDEEEKIVVDLHAKFGNKWALIASKLPGRSDNDIKNFWNSRMKKQLKVSVPKNPPKMVIQEPERQHFSSSPPPPSSFHSVLASCYPQNNLTVEPPPPIISAPNPPQIHNQNSSFSYTNSSASCVLPLAPMSPYYRASTRSTYCKKNSGLLNDVVMEGNSLHGKGKSKMVENETIAIAGKEEIVEGCETRKNPTSPQMIPTGKNNHGASMPQLDDELIRFLKDYPLYSPVEKWYPEVGFETQVHDEGFTIDVDQDWDIGNIWNIDGW 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121297g00002 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 38 IPR017930 -
Stsc121297g00002 313 CDD SANT 46 86 IPR001005 -
Stsc121297g00002 313 ProSiteProfiles Myb-like domain profile. 1 38 IPR001005 -
Stsc121297g00002 313 Pfam Myb-like DNA-binding domain 44 87 IPR001005 -
Stsc121297g00002 313 Pfam Myb-like DNA-binding domain 2 38 IPR001005 -
Stsc121297g00002 313 CDD SANT 1 38 IPR001005 -
Stsc121297g00002 313 Gene3D - 1 43 - -
Stsc121297g00002 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 93 IPR017930 -
Stsc121297g00002 313 Gene3D - 45 115 - -
Stsc121297g00002 313 SMART sant 43 91 IPR001005 -
Stsc121297g00002 313 SMART sant 1 40 IPR001005 -
Stsc121297g00002 313 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 166 - -
Stsc121297g00002 313 SUPERFAMILY Homeodomain-like 1 85 IPR009057 -
Stsc121297g00002 313 ProSiteProfiles Myb-like domain profile. 39 89 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121297g00002 Stsc-Chr121297 19862 21796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121297g00002 1 110 MYB Transcription Factor Family AT5G06100 60.000 9.76e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121297g00002 Myb_DNA-binding 7.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121297g00002 K09422 - ahf:112771967 288.115