Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121295g00001 ATGGATCTCATAACAGAAGCACCACCACCATTGTCAGAGCTACCTCCTCCTTCACTGAGTGCCTGCATAGCTGCTCTTACAATTGCGTCGCTAATTTTCTTGTGTATTTATGGATCTTCATCTACCGTGATTTATGTAGTGATATTCGTCACGATTTGCATCGCGATTTGCGTTGCCAGCGTGTTCATTTCAAGGTTCATCCATGACAGAAAACTGCTAGCAAATGTTGTAAGGTTTGATGGTAACGTATCATCAATTAGTAGCAGTGAGTGCGCAATTTGTATAGAGTGTTTCAAGAACGGAGAGGAATGCTTGGTTTTCCCAAATTGTGGCCATCTCTTTCACATGAATTGTATCAAACATTGGATACACAGTAATCCCACATGCCCAATTTGTCGTCATCGTATTCCATCAGCATCCACA 423 0.4184 MDLITEAPPPLSELPPPSLSACIAALTIASLIFLCIYGSSSTVIYVVIFVTICIAICVASVFISRFIHDRKLLANVVRFDGNVSSISSSECAICIECFKNGEECLVFPNCGHLFHMNCIKHWIHSNPTCPICRHRIPSAST 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121295g00001 141 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Stsc121295g00001 141 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 87 137 - -
Stsc121295g00001 141 SMART ring_2 91 132 IPR001841 -
Stsc121295g00001 141 SUPERFAMILY RING/U-box 90 137 - -
Stsc121295g00001 141 Pfam Ring finger domain 90 133 IPR001841 -
Stsc121295g00001 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 139 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121295g00001 Stsc-Chr121295 7809 8231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121295g00001 84 139 C3H Transcription Factor Family AT1G53010 44.643 3.97e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121295g00001 - K19039 aip:107632916 216.853