Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121294g00003 ATGGCTGTGCGCGCTCACAAGTGCAACATGGCTGCTAAGCCACCCACCCCACAGCTTCTGATGCCCTATTACACTCACTACAAGATGGGAAGAGTTAAATTAAAGATAAAGAAATTGGAAAGCACCAGCAATCGCCAAGTCACTTATTCAAAGAGGAAAAGCGGAATCTTGAAGAAAGCAAAGGAATTGTCAATACTCTGTGATATACACATCGTTCTTCTCATGTTTTCTCCAACAGGCAAGCCTACATTGCTACAAGGAGAGCGCAGCAATATCGAGGAAGTCATTGCGAAATTTGCTCAACTTACCCCACAAGAAAGGGCCAAAAGGAAATTGGAAAGTCTTGAAGCACTAAAGAAAACCTTCAAGAAATTGGATCACGATGTAAAAATACAAGATTTCTTGGGTTCGAGCAGTCAAACTGTGGAGGAATTAACTCATCAAGTAAGGCTTCTACAAACGCAGCTAACAGATATGCATCAGAGACTGAGGTGCAACTTTGGAGCTTTTGGTTGTTAA 519 0.42 MAVRAHKCNMAAKPPTPQLLMPYYTHYKMGRVKLKIKKLESTSNRQVTYSKRKSGILKKAKELSILCDIHIVLLMFSPTGKPTLLQGERSNIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELTHQVRLLQTQLTDMHQRLRCNFGAFGC 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121294g00003 172 Coils Coil 105 125 - -
Stsc121294g00003 172 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 162 - -
Stsc121294g00003 172 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Stsc121294g00003 172 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 39 83 IPR002100 GO:0003677|GO:0046983
Stsc121294g00003 172 FunFam Agamous-like MADS-box protein AGL30 42 124 - -
Stsc121294g00003 172 PRINTS MADS domain signature 66 87 IPR002100 GO:0003677|GO:0046983
Stsc121294g00003 172 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Stsc121294g00003 172 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Stsc121294g00003 172 SUPERFAMILY SRF-like 30 123 IPR036879 GO:0003677|GO:0046983
Stsc121294g00003 172 Coils Coil 142 162 - -
Stsc121294g00003 172 Gene3D - 42 125 IPR036879 GO:0003677|GO:0046983
Stsc121294g00003 172 ProSiteProfiles MADS-box domain profile. 29 81 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121294g00003 Stsc-Chr121294 19044 21875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121294g00003 29 163 Type I MADS-box Gene Family AT2G03060 68.889 8.68e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc121294g00003 SRF-TF 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121294g00003 - - aip:107633054 255.373