Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121293g00003 ATGGAGCTTTCCGCATTCCCGAGGTTCAGAGCAGTTTCTAATCCTTCCATTTCCCCTTTCTCTTCCAAACAAGTTTGTTGCTGGTTCTCTCTTCTTCTTCGTCGCCGCGACTACGGCCTTCGCTGGAACCGAAATTCGAAACCGTTTGTTCGAATCAGGTTGTGCTTGGAGAATGCTTCGTCGTCGAACGGTTATGGCGGATCCGAGAGCGGAGAAGCTAAACCTGAGTTCATCGAAGTCATCGGCATTGGCAGTCGGAAGGACGCTGTTCTCGATTTCTGCTTGAGATCGCAGTTTCAGCTCTCGTCGCTGCGATTTTGGAATGTCCTAATGAAAGAATCAAATGAGGCACAGTTACAGCTTAAATCAAGGGAAGAAGGATATGGATCGGACCTTACTGTTGCAGTTGATATTTTTGAAACTGTGAGGTCCACAAATGGGTTAGCAGTTGCTATAGTTTTGAGGCCTTTTAGCTTTGAAGGGTTAAGACGGCAGGATGAGGTGATGGATTTGGTGGGGAAGCTTAAGGAGAGCACGAATTTAATTATAGAAATTGATATTGATGCACTGCTTCAAAAAGATTTGTTGACTCTAGATGAGGCCATGAAGACTGCAAACAATGCAGTTTTGTTGGCTATTAAGGCCATATATGTATTAAAATCTGAGATGTATAAAAAACTTATAGATAGATTGCATGATGGTATGATAGAAGCCAGCACTTTAGTAGTTGATAAAATATTGGAAAACTATAAAGAAGCAGGGATTGGATTTGGAGCTGCATATGACATCAAAACCTCAATTTTGCAGTCTATATTTGAGTGTCCTTTCCTTGGTGTTCATTTGAAGGATCCAACTAGCATTGTTATATGCATTCTTGCTAGTTCAGTGCCCATTAATGATAGCGATATAGCAGCCTTTCTGCGTACATTCCGGCAAACTACAGCATATAAAGGGGACATTATAGTATCCACAATCTGTGAGCCAAATGTTGAGCCCAACTTATGGATAACAACTGTCCTGGCACTTGGTTCAAAATTGAAACAATCTGTCCAGAGTATTGGTATACTGGCCAGACTGGCCCTGCATTTTCCTCGTGTTTTTAGCTTTTGGGGGACGCATAACCAGCAACAAGTTCACGTGGGGAAAGAGTGTGCAACATCTTCTCAGAAAGTGATGGAGTCTTATGAAATGAAGGAGGAGAGTAGGAATGCTGCAGATTCTGTAGATGGCAGTTTTAGTAATCATGATGAACAGTTGAAGCCAAGAGTGAACAGCAGCAGCTCAAAGTTGGCTACTTTGAGGTTTTCTGAAAAAGAAGATATGTATGACTCTGTAGCCCAGAATTCTCTCCCTGTTGACTCTATTACCGAAGATGACTCTGCTTTTGAAAGGGAGCAACTTGAAAACTGGAATCTGGGTCCTGGATATGAGGTGGCAAGGGAGTGGGCCCAAGAAAGGGTAGCTAATGCGGCGCATATGATTGATAACCTAAGCATATTCCATCTTCCTGTAGGTGTGAGGCCTTCAGAAGATTTGAAAGATTGTTCAAAAGTCTCATTCATGACAGAACTGAAGGATCTGGAATTCAATGAAGTAAATCTATCAACAATAAATGAGGGCATGTCTTGGAATGCAGTGACTGATGCAAGTTTAGAAGCAGTAAAGGGATTGGCATCTTCACTTTTGAAGGGTAAAGATGCTTCTAAACCAAAGAAACATGGAGTACTATCTAATAGAGCTGCTTCTATGCTGGAGGCTGAACGGGACTTGTCAAAAAAGTGGAATCCTGTTATGGAAATGCAATACAGGGGAGGAAGATACAAGGGACGATGCCAAGGAGGCCTTCCTGAAGGAAAGGGGCGTCTTGTTCTTGGAGATGGAAGTATATATGATGGTTCATGGCGCCATGGTAAGAGATCAGGCTCAGGTACCTTCTATTTCAAAAATGGAGACATGTTTCAAGGATCATGGAGGGATGATGTCATGCACGGCAAGGGTTGGTTTTATTTTCACACTGGTGATCGGTGGTTTGCAAACTTTTGGAAGGGAAAAGCCAATGGTGAGGGGCGGTTCTACAGCAAGTCTGGTGATGCCTTCTTCGGGAATTTCAAAGATGGTTGGCGGCAAGGCCAATTTCTTTGCATCAATGCTAACGGAACGAGGTATATTGAAATTTGGGAACAAGGTGTTCTTTTAGACATCAAACAGTTAGATGACCAAGCACTATAA 2229 0.4271 MELSAFPRFRAVSNPSISPFSSKQVCCWFSLLLRRRDYGLRWNRNSKPFVRIRLCLENASSSNGYGGSESGEAKPEFIEVIGIGSRKDAVLDFCLRSQFQLSSLRFWNVLMKESNEAQLQLKSREEGYGSDLTVAVDIFETVRSTNGLAVAIVLRPFSFEGLRRQDEVMDLVGKLKESTNLIIEIDIDALLQKDLLTLDEAMKTANNAVLLAIKAIYVLKSEMYKKLIDRLHDGMIEASTLVVDKILENYKEAGIGFGAAYDIKTSILQSIFECPFLGVHLKDPTSIVICILASSVPINDSDIAAFLRTFRQTTAYKGDIIVSTICEPNVEPNLWITTVLALGSKLKQSVQSIGILARLALHFPRVFSFWGTHNQQQVHVGKECATSSQKVMESYEMKEESRNAADSVDGSFSNHDEQLKPRVNSSSSKLATLRFSEKEDMYDSVAQNSLPVDSITEDDSAFEREQLENWNLGPGYEVAREWAQERVANAAHMIDNLSIFHLPVGVRPSEDLKDCSKVSFMTELKDLEFNEVNLSTINEGMSWNAVTDASLEAVKGLASSLLKGKDASKPKKHGVLSNRAASMLEAERDLSKKWNPVMEMQYRGGRYKGRCQGGLPEGKGRLVLGDGSIYDGSWRHGKRSGSGTFYFKNGDMFQGSWRDDVMHGKGWFYFHTGDRWFANFWKGKANGEGRFYSKSGDAFFGNFKDGWRQGQFLCINANGTRYIEIWEQGVLLDIKQLDDQAL 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121293g00003 742 Gene3D - 677 736 - -
Stsc121293g00003 742 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 131 729 - -
Stsc121293g00003 742 MobiDBLite consensus disorder prediction 397 423 - -
Stsc121293g00003 742 SUPERFAMILY Tubulin nucleotide-binding domain-like 78 218 IPR036525 -
Stsc121293g00003 742 Gene3D Tubulin/FtsZ, GTPase domain 126 343 IPR036525 -
Stsc121293g00003 742 MobiDBLite consensus disorder prediction 406 423 - -
Stsc121293g00003 742 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 604 730 - -
Stsc121293g00003 742 Gene3D - 609 666 - -
Stsc121293g00003 742 Pfam MORN repeat 612 628 IPR003409 -
Stsc121293g00003 742 Pfam MORN repeat 630 652 IPR003409 -
Stsc121293g00003 742 Pfam MORN repeat 680 697 IPR003409 -
Stsc121293g00003 742 Pfam MORN repeat 653 675 IPR003409 -
Stsc121293g00003 742 SMART morn 605 626 IPR003409 -
Stsc121293g00003 742 SMART morn 628 649 IPR003409 -
Stsc121293g00003 742 SMART morn 697 718 IPR003409 -
Stsc121293g00003 742 SMART morn 651 672 IPR003409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121293g00003 Stsc-Chr121293 4809 13325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121293g00003 1 738 PP2C-type Phosphatase Gene Family AT1G75010 43.758 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121293g00003 - - aip:107618192 1023.85