Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121292g00002 ATGCTAGGACCACATTTAGCCACTTTGCTTGCTTCGACGGTTCGACTTCTCTGGTGGAAACTCAGGAACCTAACCCATATGAAAGGCATGGGTTGGAGATGTTGCAGTGTGGTTCTTCTTCTTCTTCTTCAACCGCTCGTAGCTTCTCCGAGCTCTATTGTTAAGAACCTTCCGGGTTATGATGGCGATCTTCCATTCAAGCTTGAAACCGGATATGTAGGAGTTGGGGAGCAACAAGAAGTGCAATTGTTTTACTTGTTTGTGGAATCTCAAAGAAATCCTTTTATAGACCCAGTTCTCATGTGGTTCGTTGGAGGTCCTGGTTGCTCCGCACTTTCTGCGTTCTTCTTCGAAAATGGACCTCTAAAAATGGATCAGAATTTTAGTGGAAACATTCCAAAACTTGAATTGAATCCATATTCGTGGACCCATATGCTAAACATGATATACATAGACATCCCAGTGGGCACTGGATTTTCTTACTCAAAAACACAGGAAGGCTACTACAGTAATGACACATTATGGGTTGAGCATACATATGCCTTTCTACAAAAGTGGTTTATTGATCATCCAAAGTTCAACTCAAATCCATTTTATGTTGGTGGTGGCTCATATTCAGGAGCTCCCACTGCTCCTCTCGTTCAAAAATTATATGATGGTTATGTAGCAGGTCTTGTACCACGCATTAATATCAAAGGTTATGTGATTGCAAGCCCACTGGTGGACACATATCAGATTATCAACATGAGAGTGTTATATGCATACCATATGTCTCTCATACCAGAATCACTCTATGAGTCCATAAAAGAAAACTGTGGTGGTGATTACGTAAATATTGATCCAGAAGACACAAAGTGTGTCTCAGATTATGAAGCTTATTCCGAGTTAGTTCGTTACATAAATCCACAACAAATTTTGGAACCTTTGTGTTCAACAACACCTGCTCTAAACCATGGAATTTTACAATCCTCACTTCAATATCGTTCAGAACTTTGGTGTAGAAGTTATAGTCACATTCTTGTGAACACATGGGCAAACGATGAAAGTGTGAGGAAAGCCTTGTACATCAGAGAGGGAACTAAGGGAGAGTTCTTGAGATGCAACAAGACTTTGGCATATACATCCAATTTATTAAGCGTTGTAGAATATTATCAAAATTTGACCAAAGCCAACATCCAAGCTCTAGTTTACTGCTCTGATCTTGATATGTCAGTACCACATTTGGCTACAGAATATTGGATAAAGTCATTAAACCTTAGCATATATGAAAAGTGGCGCGCATGGTTTGTTGATGGTCAAGTGGCCGGATATACGGAAATTTACAAAATGAAACAAGACCATTACTTAACATATGTGACAGTAAAGGGTGCTGGACATGTTGCCCAGACATTTAAACCCAAGGAAGTTTACCATTTGTTACAGAGGTGGTTTTCCTATTCTCATATATAA 1449 0.3954 MLGPHLATLLASTVRLLWWKLRNLTHMKGMGWRCCSVVLLLLLQPLVASPSSIVKNLPGYDGDLPFKLETGYVGVGEQQEVQLFYLFVESQRNPFIDPVLMWFVGGPGCSALSAFFFENGPLKMDQNFSGNIPKLELNPYSWTHMLNMIYIDIPVGTGFSYSKTQEGYYSNDTLWVEHTYAFLQKWFIDHPKFNSNPFYVGGGSYSGAPTAPLVQKLYDGYVAGLVPRINIKGYVIASPLVDTYQIINMRVLYAYHMSLIPESLYESIKENCGGDYVNIDPEDTKCVSDYEAYSELVRYINPQQILEPLCSTTPALNHGILQSSLQYRSELWCRSYSHILVNTWANDESVRKALYIREGTKGEFLRCNKTLAYTSNLLSVVEYYQNLTKANIQALVYCSDLDMSVPHLATEYWIKSLNLSIYEKWRAWFVDGQVAGYTEIYKMKQDHYLTYVTVKGAGHVAQTFKPKEVYHLLQRWFSYSHI 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121292g00002 482 FunFam Carboxypeptidase 332 482 - -
Stsc121292g00002 482 Gene3D alpha/beta hydrolase 48 321 IPR029058 -
Stsc121292g00002 482 Pfam Serine carboxypeptidase 58 478 IPR001563 GO:0004185|GO:0006508
Stsc121292g00002 482 Gene3D - 333 481 - -
Stsc121292g00002 482 SUPERFAMILY alpha/beta-Hydrolases 54 478 IPR029058 -
Stsc121292g00002 482 FunFam Serine carboxypeptidase-like 19 47 315 - -
Stsc121292g00002 482 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 52 466 IPR001563 GO:0004185|GO:0006508
Stsc121292g00002 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 186 211 IPR001563 GO:0004185|GO:0006508
Stsc121292g00002 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 449 462 IPR001563 GO:0004185|GO:0006508
Stsc121292g00002 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 161 IPR001563 GO:0004185|GO:0006508
Stsc121292g00002 482 PRINTS Carboxypeptidase C serine protease (S10) family signature 138 150 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121292g00002 Stsc-Chr121292 11886 34855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121292g00002 344 478 Calmodulin-binding Proteins AT2G22960 45.926 6.35e-38 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121292g00002 K16296 - qsu:112035786 497.278