Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121284g00001 ATGGAAGATTCAGAGGAAGAAGAGCTCCTGAACCTTAGCCTTTCAGTGGCTGTTGATAGGGAAAGAAAGAAAAAGAAAGGAAAGACCATTAAAGAAAAAAACAACAACAATAATGCTTCTCCTTATTATTATTCTCCTCCTTCTATGATGATGATGATGAGTAGCAGTAGTAGTAGCAGCACAACTATGATTAGCTCCTATGATGAGAGCTATGAAGCAAAAATCTTTAGGCTTCTACAAATGAGAGAGAAAATGCTAAGACAAGATCATAGCAATAATAATAATAATAGAAACAAAGGAGGAGGCTTTCTTGTTCTTCAACATTATCATCATCACAACAACAACAACAATGGCCTCCCTTTGATCCATTTGCTCCTCTCAACCGCCACCGCCGTCGACGCCGCCGACTTCGCAGCCGCCTTGGACAACCTCACTGAGCTCTACCAGAGCGTGTCCCTAACCGGCGACTCAGTTGAGCGTGTGGTGGCGTATTTCTCTGATGGGTTAACCGCAAGGCTTCTCACAAGGAAGTCCCCTTTCTATGACATGATCATGGAGGAACCAACTTGCGAGGAAGAGTTTCTTGGTTTCACTGATCTCTATAGAGTCTCTCCCTACTTCCAATTCGCACATTTCACTGCAAATCAAGCAATCTTGGAGGCCTTCGAAAGGGAAGAAGATCGAAACAACCGTTCCATTCATGTCATCGATTTCGACGTCTCTTATGGCTTCCAGTGGCCTTCTCTAATACAGTCGCTATCAGAGAAGGCCACTAGTGCCAACCGCATTTCCCTAAGGGTAACAGGATTTGGGAAGAATCTGAAGGAGCTGCAAGAAACTGAGTCAAGATTAGTGAGCTTCTCAAAGGGATTTAGCAACCTTGTGTTTGAGTTCCAAGGGCTTCTGAGAGGGTCAAGGGTGATAAACCTAAGGAAGAAGAAGAACGAAACAGTGGCAGTGAACTTGGTTTCATACTTGAACACCTTGACCTGTTTCATGAAGATCTCAGACACATTGGGCTTTGTCCATTCTCTTAACCCCTCCATTGTTGTGCTGGTTGAGCAAGAAGGTAGCAGAACCCCAACAAGGACGTTCTTGTCAAGATTCACAGACTCATTGCACTACTTCGCCGCCATGTTTGATTCTCTTGATGATTGCCTCCCATTGGAGAGCACCGAGAGGCTGAGGATTGAGAAGAAGCTTCTCGGGAAGGAGATCAAGAACATGCTCAACAACTATGAAAGCAACAACAACAATGGCGGTGGTGGAGATTGTGCAAAGTATGAGAGGATGGAGACATGGAAGGCAAGAATGGAGAATCATGGTTTTGTTGGCAACAAGATAAGCTCCAAGGCCATGATTCAAGCCAAGCTTCTTTTGAAGATGAGGACTCATTATTGTCCAATGCAGTTTGAAGAAGAGGAAGACGGTGGCGGAAGCGGCGGCGGTGGCGGTTTTCGGGTTTCCGAGAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTTCTTACTGTCTCAGCTTGGCAACCACTTCTTTGA 1551 0.4507 MEDSEEEELLNLSLSVAVDRERKKKKGKTIKEKNNNNNASPYYYSPPSMMMMMSSSSSSSTTMISSYDESYEAKIFRLLQMREKMLRQDHSNNNNNRNKGGGFLVLQHYHHHNNNNNGLPLIHLLLSTATAVDAADFAAALDNLTELYQSVSLTGDSVERVVAYFSDGLTARLLTRKSPFYDMIMEEPTCEEEFLGFTDLYRVSPYFQFAHFTANQAILEAFEREEDRNNRSIHVIDFDVSYGFQWPSLIQSLSEKATSANRISLRVTGFGKNLKELQETESRLVSFSKGFSNLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLTCFMKISDTLGFVHSLNPSIVVLVEQEGSRTPTRTFLSRFTDSLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKNMLNNYESNNNNGGGGDCAKYERMETWKARMENHGFVGNKISSKAMIQAKLLLKMRTHYCPMQFEEEEDGGGSGGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQPLL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121284g00001 516 MobiDBLite consensus disorder prediction 18 43 - -
Stsc121284g00001 516 Pfam GRAS domain family 121 513 IPR005202 -
Stsc121284g00001 516 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 89 508 IPR005202 -
Stsc121284g00001 516 ProSiteProfiles GRAS family profile. 112 513 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121284g00001 Stsc-Chr121284 6908 8775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121284g00001 129 514 GRAS Transcription Factor Family AT3G54220 33.671 3.72e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc121284g00001 GRAS 6e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121284g00001 - - ahf:112776716 751.895