Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121281g00005 ATGGGTCATAGACACATATATGGTGCACCTCCAGTGTTTGATGGTGAGCCTGACCAAAATTGGAGTCATATGCATGCTGATCAGCATTATGTGCACCTGGGTAGGACTAACACTTCTGAGAATGGTTCCTTTATTTATCCTGTTGAAAACATGTCCATAGATAGCATTTCTTTCCCCTCTCAATGGAATTCGGCTACAAGGTCAAATGGTTATGCATCCTCAAGCCTAAACAATGAAGTAACTCCTCATCAATCAGATGCATCAGGGTCTTCTAATGATCATTTTACACATCCCACTACTGCTGGATCTTTCTTTGCTGTGTCTGAAAACTATGCACACCACCCTTCTTCTTCCAATTATGACAGGCAAGCCTTCCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGGCGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTCCAGTCCGCGAGAGAGGCAGTTCAAGCAGATATTTCAATCCTGGGACTTCAACTGATCTTTCAATAGCTTCAGAATTAAGGCCAGAGAAGCCAAATATGGATTCTCAATATATGCCTTGGGATCATGTTACTATGACGCCTGCACTTAGAGGTGGTGGCCTTTCAATAAGGGGAGAGGGTTCTTTAAGGAATGTGAGGAGTCGTTCTACGCTCACTTTGGAACCCAATCTGGCTAGGACCCATTTAGCAAGTAGTCAGTCACACAACTCCTTCACTCCTGTTCCACCAGTTGAGCATTCTAGCATGGTGGATCTGTCAGGTCAGACATCTACCACTTTGACTAGGGATTGGAGCCAAATGAACACATCTGCTTCGCATGGAAGGGTATTATTATCAGATGCAAGTGCTTTTAATCTTGAACCTAGTCACTTCCTTGTTGGAAGTAGTGCTACTTCTAGCAATGCTTCTGTGGATGTTGGAGGTTTCCATCATGAATTTGTTACAAGTAGAAACCCTGTTGCTCCTCCAATTTTTCATAATAATCCAACTCAAACTGCTAGAGGAGTTCGAAGTAACTACTCTCAGAGGTTGACTCCGGCTTTTAGGGCTTCTTCGGGCCTACGCTTGGGACATGCGACACCTTCAGATGATGGATTGCCTATGGTAGGTGAAAGTTACTCCTCTAGACATCCAAGGCCATTGACCACCATCGGTTGGCGTAATGGTGATAGAAATGGGAGGCCAAGAATATCTAGTGATAGATACAGATCATTAGCTGATGAGGGTTTCATGATTGTTGAGCGAGCAGCACTCTATGGTCCAAGGAATATGCATGATCAACACAGGGATATGAGGATGGACATAGACAACATGAGCTATGAGGACCTACTTGCACTTGGCGAGAGGATTGGCCATGTGAATACAGGGTTATCTGAAGATTTGTTTTCCAAGTGTTTGACAGAAACCATATATTGTTCATCTGAGCAAAGCCGAGATGAAGGAAATTGTGTTATCTGTCTTGAAGAGTACAAGGACAGGGAAGATGTTGGGACACTTAAAACATGTGGACATGATTACCATGTGAGCTGCGTTAAGAAGTGGTTATCTATGAAGAAATTGTGCCCTATCTGTAAAGCTTCTGCTTTACCTGAGGATACAAAGGACAAATAA 1623 0.4356 MGHRHIYGAPPVFDGEPDQNWSHMHADQHYVHLGRTNTSENGSFIYPVENMSIDSISFPSQWNSATRSNGYASSSLNNEVTPHQSDASGSSNDHFTHPTTAGSFFAVSENYAHHPSSSNYDRQAFHVDGGFIDLTMGSGRGPHKRKSPGIPPVRERGSSSRYFNPGTSTDLSIASELRPEKPNMDSQYMPWDHVTMTPALRGGGLSIRGEGSLRNVRSRSTLTLEPNLARTHLASSQSHNSFTPVPPVEHSSMVDLSGQTSTTLTRDWSQMNTSASHGRVLLSDASAFNLEPSHFLVGSSATSSNASVDVGGFHHEFVTSRNPVAPPIFHNNPTQTARGVRSNYSQRLTPAFRASSGLRLGHATPSDDGLPMVGESYSSRHPRPLTTIGWRNGDRNGRPRISSDRYRSLADEGFMIVERAALYGPRNMHDQHRDMRMDIDNMSYEDLLALGERIGHVNTGLSEDLFSKCLTETIYCSSEQSRDEGNCVICLEEYKDREDVGTLKTCGHDYHVSCVKKWLSMKKLCPICKASALPEDTKDK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121281g00005 540 CDD RING-H2_RNF24-like 487 532 - -
Stsc121281g00005 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 112 533 IPR045191 GO:0061630
Stsc121281g00005 540 SUPERFAMILY RING/U-box 477 533 - -
Stsc121281g00005 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 533 IPR013083 -
Stsc121281g00005 540 MobiDBLite consensus disorder prediction 358 378 - -
Stsc121281g00005 540 SMART ring_2 487 528 IPR001841 -
Stsc121281g00005 540 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 452 533 - -
Stsc121281g00005 540 ProSiteProfiles Zinc finger RING-type profile. 487 529 IPR001841 -
Stsc121281g00005 540 MobiDBLite consensus disorder prediction 136 170 - -
Stsc121281g00005 540 Pfam Ring finger domain 486 529 IPR001841 -
Stsc121281g00005 540 MobiDBLite consensus disorder prediction 67 95 - -
Stsc121281g00005 540 MobiDBLite consensus disorder prediction 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121281g00005 Stsc-Chr121281 27248 34289 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121281g00005 1 539 C3H Transcription Factor Family AT2G37150 41.187 1.04e-104 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121281g00005 - - gmx:100803627 895.575