Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121279g00009 ATGGCAACAAAGTCCTTAGCCATAGCAATGTTTATTGTTGTGGTTAGCACCTTCGTAGTGTTAGGGAAATCATCACCATTATTGTCACAAGAATCTGATGAAGATCATAAGATTCCAGACATCATAAGCAATAGTAAGGAGTTCATATTAGAAGAAAAAGAAGCCAAAAGTGGTGATTATTGTGGTGGCAAAGACATTGTAAAAACTATCATTGTTAATCAACATGGTAGTAGTAGCAACAATGGTACATTTACAAGAATTCAAGATGCTATTGATTCTATTCAAGTCAACAATAATCGATGGGTGAAGATTTATATTCATGCTGGCACATACAAGGAGAAGGTTGATGTTCGTATGAATAAGCCATGCATTGTTTTAGAAGGAGAGAACAGGCACAACACAATAGTCACATATGGTGATCATCAAAAAACAGATACAAGTGCTACTTTTACTTCATCACCATCCAATGTTGTTGTGACTGGCATCACTTTCAAGAACTCATTTAATGTGAGGTTGAGAAGAGAAATAAAAGATGAGATAGAAGAAGAGGGAAAAATCCTACCAGCAGTTGCAGCAAGAATATATGGAAATAATACAGCCTTTTATAAGTGTGGTTTCATAGGTTATCAAGACACTTTGTTTGATATAATAGGAAATCATTACTTCAAAAAATGCTATATTCAAGGTGAAGTCGATTTCATTTTCGGCAATGGCCAATCTTTTTACGAGAATTGTGTAATAAACGCGACGGGAGGAGAATTACCGGGGTTTGTAACTGCCCAAAGTAGAAATAAGTCAACGGATGAAGGTGGTTTTGTGTTTGAGAGAGGTCATGTTCTTGGAAGTGGTAAAATCAATTTAGGAAGAGCTTGGGGTTTATATTCTAGGGTTATTTTTCATGGAACATACTTTGAATCTATAATCACTCCTCAAGGTTGGAATGCTTGGGATCATGTTGGACAAGAAGATAAATTTACTTATGCTGAAGTTAATTGCAAAGGACCAGGAAGTAATACTAAAGATCGTGTGAAATGGGAGAAGAAGTTAAACTATTCGGATATGCAAAAATTTTCTTTATCATCTTTTGTTAATAAAGATGGATGGCTTCAAAATTTACCTATTAGCCTTAATTCATAG 1137 0.35 MATKSLAIAMFIVVVSTFVVLGKSSPLLSQESDEDHKIPDIISNSKEFILEEKEAKSGDYCGGKDIVKTIIVNQHGSSSNNGTFTRIQDAIDSIQVNNNRWVKIYIHAGTYKEKVDVRMNKPCIVLEGENRHNTIVTYGDHQKTDTSATFTSSPSNVVVTGITFKNSFNVRLRREIKDEIEEEGKILPAVAARIYGNNTAFYKCGFIGYQDTLFDIIGNHYFKKCYIQGEVDFIFGNGQSFYENCVINATGGELPGFVTAQSRNKSTDEGGFVFERGHVLGSGKINLGRAWGLYSRVIFHGTYFESIITPQGWNAWDHVGQEDKFTYAEVNCKGPGSNTKDRVKWEKKLNYSDMQKFSLSSFVNKDGWLQNLPISLNS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121279g00009 378 Pfam Pectinesterase 79 365 IPR000070 GO:0030599|GO:0042545
Stsc121279g00009 378 SUPERFAMILY Pectin lyase-like 69 373 IPR011050 -
Stsc121279g00009 378 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 67 370 - -
Stsc121279g00009 378 Gene3D - 63 378 IPR012334 -
Stsc121279g00009 378 FunFam Pectinesterase 64 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121279g00009 Stsc-Chr121279 35216 37007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121279g00009 66 322 Carbohydrate Esterase AT2G19150 46.565 8.63e-74 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121279g00009 - - gmx:100787453 379.793