Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121277g00006 ATGTGTACTAGAGGGCATTGGAGGCCAGCTGAGGATGAGAAGCTTAGGGAGCTTGTGGAACGCTATGGACCTCATAATTGGAATGCCATAGCTGAAAAGCTTCGTGGAAGATCAGGGAAAAGTTGTAGGTTAAGATGGTTCAATCAATTGGATCCAAGAATAAACAGAAATCCTTTCACAGAGGAAGAAGAAGAGAGGCTTTTAGCATCTCACAGGATTCATGGAAACAGATGGTCAGTTATTGCAAGACACTTCCCTGGAAGAACTGATAATGCTGTCAAGAACCATTGGCATGTCATGATGGCTAGAATTCGCAGAGAAAGATCTAAACTTTATGCAAAACGACCACTTCATCATCATCATCATAGAACAACATTTTTTTCTCCAACCCTACAACAACAACAAGAGGATCATGATGATGATGAGAAAACAAAAAATAATATATCCTCTCTTGTTATTGAAAAGTTNNNNNNNNNNACTACCCTTCTTGTCTCACTTATGCAACTTTCCAACTTCCTAACAAGTTTCACTTTCATCATCAAGGTCCAAGTTCTTGTGCTACATTGCTTCAAGAGAGAAGTAGTCAATCAATTGAGTTCTATGACTTTCTTCGAGTAA 618 0.3835 MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLLASHRIHGNRWSVIARHFPGRTDNAVKNHWHVMMARIRRERSKLYAKRPLHHHHHRTTFFSPTLQQQQEDHDDDEKTKNNISSLVIEKXXXXTTLLVSLMQLSNFLTSFTFIIKVQVLVLHCFKREVVNQLSSMTFFE 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121277g00006 205 MobiDBLite consensus disorder prediction 123 145 - -
Stsc121277g00006 205 Gene3D - 4 55 - -
Stsc121277g00006 205 FunFam MYB transcription factor 4 55 - -
Stsc121277g00006 205 Pfam Myb-like DNA-binding domain 7 67 - -
Stsc121277g00006 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Stsc121277g00006 205 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Stsc121277g00006 205 Gene3D - 57 123 - -
Stsc121277g00006 205 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Stsc121277g00006 205 SMART sant 55 103 IPR001005 -
Stsc121277g00006 205 SMART sant 3 52 IPR001005 -
Stsc121277g00006 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Stsc121277g00006 205 ProSiteProfiles Myb-like domain profile. 4 50 IPR001005 -
Stsc121277g00006 205 CDD SANT 58 101 IPR001005 -
Stsc121277g00006 205 CDD SANT 7 48 IPR001005 -
Stsc121277g00006 205 PANTHER MYB PROTEIN-RELATED 4 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121277g00006 Stsc-Chr121277 26761 29451 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121277g00006 1 125 MYB Transcription Factor Family AT1G17950 84.800 6.04e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121277g00006 Myb_DNA-bind_6 6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121277g00006 K09422 - qsa:O6P43_005257 241.121