Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121272g00001 ATGCAAGCTGAACCGTTGATAGCTAGAATTCAGTCTTTAGGGTCCAATATTTTGCAGAAGATGAAGGCTTCACAGCAATGTCTACCAGATGATTTGGGGCATGATATGACATCAATCATTAAGGAAGCTATAGATGAACAACTGGAAGGTGAAGGACCAAGTTCTGAGATTCTGGAAAATATTGCTGAGATACTTGATTTAAGGTCTAATCAAGATGTCTTCATTGAGGCTGTGGCCCTTGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAACATTGCAGAAGCTGAATTTATTGATCAAATGATATCTGTTGTGACTCGTATGCACGAGCGAATCATCATGCTTAAGCAAGCTCGGAGCTCTATCCCGGATTCGGTACCTGCTGATTTTTGCTGTCCTCTCTCTTTGGAGTTGATGACAGATCCGGTCATTGTGTCATCCGGGCAAACCTATGAACGAGCTTTCATCAAGGACTGGATTGATCTTGGGCTTATGGTTTGTCCAAAGACGCGCCAGACTCTAGTTCACACCAATCTAATTCCTAACTTCACAGTAAAAGCATTGATTGTTAATTGGTGTGAAACAAACAATGTGACACTGGTTGATCCAGTGAAGTCCACAACCACAACCATAAACAAACATTCTCTCCTTGATGGATCCATTGAGTCCGGTTCAGCTGATGAATCGACTGTTAGAACTTCTTTCGGAGGAAACAACCGAGAGGAAACATCACCATTGCATCCTATGCATCCTAGTTCAACTCCAGAAGATTCCTTTAGTAGTGGCATGGATAATTCACAACATGTGGATCCTATAAGAATATCATCTGCAGTTTCAGATGATAGTCTTACTAGCTCGGATGAAGAAAGTGTGGATTTAGTTTCCCAATCATCATCAACTTCACCATCTAGAAGGGAAGATTCAAATGCCTTGAGATCAGAGCAATCTCAAAACCATGTAAGAACTGATTCTGTTTCCAGTGAACACTATAGTGAAAATTTCCCTCAAGGCATACAGGGTGATATCAACAATGTTCCTTTTCCATCAACCAGTCCAATCCACAGCCGAGATGCTTCTGAGGAATTAGCTCCCGAGCCGGATACTGCTCCCGTCAGGCCGGTTCCACCAGGTGAGGCAGAGTTTCCTCCACAACCGGTGCAGCCAAGGTTTCCAAGAAAAACTGTATTAAATAGGCCATCAGAGAGGTTTGTCCCTAGAATAGTTTCTTCTCCTCCTGTTGAACCAAGAGGGGATGGAGTTGGTATTGAATCCAGGGTTAAGGAGTTGGTTGAGCTCTTGAAGAGCTCTTCCCTTGATACTCAGAGGGAAGCCACAGGAGAACTTCGCCTTCTTGCTAAGCACAACATGGATAACAGAATTGTGATTGCAAACTGTGGAGCCATTAGCTTGTTGGTCAATTTGCTTGAATCAACCGATACAACGATCCAAGAAAACTCGGTTACAGCACTTCTTAACTTATCAATCAATGACAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTCCTTGAGAATGGGAGTGCAGAAGCTAAGGAGAACTCGGCCGCCACTCTTTACAGCTTATCAGTGGTTGAGGAAAACAAGATCAGGATAGGGAAGGCCGGGGCAATTAAGCCTCTGGTTGAGTTGTTAAGGGATGGAACCCCAAGGGGTAAGAAAGATGCTTCCACTGCTTTATTTAACTTGTCTATATTTCACGAAAACAAGGATCGAATCGTAGAAGCCGGTGCTGTGAAGCACCTTGTGGATTTGATGGACCCTGCAGCTGGTATGGTGGATAAGGCAGTGGCTGTTCTAGCAAATCTCGCCACAGTACCGGAAGGAAGAACCGCCATTGGACAACAAGGTGGAATTCCTCTTCTGGTTGAGGTTGTTGAGTTGGGTTCTACCAGAGGAAAGGAGAATGCAGCTGCAGCTCTTCTACATCTTTGCGCAAACCATCCGAGATACTTAAACATGGTACTCCAAGAAGGAGCCGTTCCGCCGTTAGTAGCTTTATCAAGATCAGGCACAGCAAGGGCTAAAGAGAAGGCCCTGTCTCTTCTAAATCATTTTAGAGATCGACGACATGGTGGTGCTGTGAGGAGCTAG 2133 0.4421 MQAEPLIARIQSLGSNILQKMKASQQCLPDDLGHDMTSIIKEAIDEQLEGEGPSSEILENIAEILDLRSNQDVFIEAVALERLKENAEQTENIAEAEFIDQMISVVTRMHERIIMLKQARSSIPDSVPADFCCPLSLELMTDPVIVSSGQTYERAFIKDWIDLGLMVCPKTRQTLVHTNLIPNFTVKALIVNWCETNNVTLVDPVKSTTTTINKHSLLDGSIESGSADESTVRTSFGGNNREETSPLHPMHPSSTPEDSFSSGMDNSQHVDPIRISSAVSDDSLTSSDEESVDLVSQSSSTSPSRREDSNALRSEQSQNHVRTDSVSSEHYSENFPQGIQGDINNVPFPSTSPIHSRDASEELAPEPDTAPVRPVPPGEAEFPPQPVQPRFPRKTVLNRPSERFVPRIVSSPPVEPRGDGVGIESRVKELVELLKSSSLDTQREATGELRLLAKHNMDNRIVIANCGAISLLVNLLESTDTTIQENSVTALLNLSINDNNKTAIANAGAIEPLIHVLENGSAEAKENSAATLYSLSVVEENKIRIGKAGAIKPLVELLRDGTPRGKKDASTALFNLSIFHENKDRIVEAGAVKHLVDLMDPAAGMVDKAVAVLANLATVPEGRTAIGQQGGIPLLVEVVELGSTRGKENAAAALLHLCANHPRYLNMVLQEGAVPPLVALSRSGTARAKEKALSLLNHFRDRRHGGAVRS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121272g00001 710 Gene3D - 423 498 IPR011989 -
Stsc121272g00001 710 FunFam RING-type E3 ubiquitin transferase 412 705 - -
Stsc121272g00001 710 MobiDBLite consensus disorder prediction 220 307 - -
Stsc121272g00001 710 SUPERFAMILY ARM repeat 427 699 IPR016024 -
Stsc121272g00001 710 Pfam U-box domain 127 197 IPR003613 GO:0004842|GO:0016567
Stsc121272g00001 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 201 IPR013083 -
Stsc121272g00001 710 PANTHER U BOX DOMAIN-CONTAINING 17 700 - -
Stsc121272g00001 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Stsc121272g00001 710 Pfam Armadillo/beta-catenin-like repeat 497 536 IPR000225 GO:0005515
Stsc121272g00001 710 Pfam Armadillo/beta-catenin-like repeat 581 617 IPR000225 GO:0005515
Stsc121272g00001 710 Pfam Armadillo/beta-catenin-like repeat 540 577 IPR000225 GO:0005515
Stsc121272g00001 710 Pfam Armadillo/beta-catenin-like repeat 458 495 IPR000225 GO:0005515
Stsc121272g00001 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 591 IPR000225 GO:0005515
Stsc121272g00001 710 ProSiteProfiles U-box domain profile. 126 200 IPR003613 GO:0004842|GO:0016567
Stsc121272g00001 710 FunFam RING-type E3 ubiquitin transferase 126 201 - -
Stsc121272g00001 710 MobiDBLite consensus disorder prediction 314 357 - -
Stsc121272g00001 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 508 550 IPR000225 GO:0005515
Stsc121272g00001 710 Coils Coil 77 100 - -
Stsc121272g00001 710 CDD RING-Ubox_PUB 128 180 IPR045210 -
Stsc121272g00001 710 SUPERFAMILY RING/U-box 117 204 - -
Stsc121272g00001 710 Gene3D - 499 602 IPR011989 -
Stsc121272g00001 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 590 631 IPR000225 GO:0005515
Stsc121272g00001 710 SMART Ubox_2 130 193 IPR003613 GO:0004842|GO:0016567
Stsc121272g00001 710 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 509 IPR000225 GO:0005515
Stsc121272g00001 710 Gene3D - 603 704 IPR011989 -
Stsc121272g00001 710 MobiDBLite consensus disorder prediction 369 390 - -
Stsc121272g00001 710 SMART arm_5 497 537 IPR000225 GO:0005515
Stsc121272g00001 710 SMART arm_5 415 454 IPR000225 GO:0005515
Stsc121272g00001 710 SMART arm_5 538 578 IPR000225 GO:0005515
Stsc121272g00001 710 SMART arm_5 579 618 IPR000225 GO:0005515
Stsc121272g00001 710 SMART arm_5 456 496 IPR000225 GO:0005515
Stsc121272g00001 710 SMART arm_5 619 659 IPR000225 GO:0005515
Stsc121272g00001 710 SMART arm_5 660 701 IPR000225 GO:0005515
Stsc121272g00001 710 MobiDBLite consensus disorder prediction 220 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121272g00001 Stsc-Chr121272 22694 25354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121272g00001 87 709 U-box Gene Family AT2G23140 58.462 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121272g00001 - - adu:107458158 1150.19