Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121271g00006 ATGAAACCCTCCCACAACCGCTTTCCGTCGAGCTCCGCAAGAACCAACCCACTGCAAGGATTTCAGAGAACTGCTCTGACTTACATTGATGCTGATGGAAACTGGCACAGTTCAAGCAAAGGTGCTCCAGAGCAGATCATGAACTTGTGTAATATGAGCGAAGATGCTAGGAAGAAGGTCCATGCTATTATTGACAAGTTCACCGAAAGAGGCCTTCATTCGCTTGCTGTTGCTAGACAGGTTTCTGTGGCTGTTCCTGGTGGTAGTGATTTGTCTATCAGAAGATCTGCGTTTAAGTGGCAAGAAGGCGATCTAGACTACGATTCTAAACCTGAAAGAACACTCTTAAGGAGAAGAAGAGAGGCTAGAAGGTTGTAA 378 0.4577 MKPSHNRFPSSSARTNPLQGFQRTALTYIDADGNWHSSSKGAPEQIMNLCNMSEDARKKVHAIIDKFTERGLHSLAVARQVSVAVPGGSDLSIRRSAFKWQEGDLDYDSKPERTLLRRRREARRL 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121271g00006 125 PANTHER CALCIUM-TRANSPORTING ATPASE 22 81 - -
Stsc121271g00006 125 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 25 86 IPR023299 GO:0000166
Stsc121271g00006 125 Gene3D - 16 110 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121271g00006 Stsc-Chr121271 35506 40206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121271g00006 16 80 Primary Pumps ATPases AT2G24520 72.308 5.29e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121271g00006 K01535 - gmx:100816905 105.916