Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121270g00008 ATGAGCAATAATGTTGGGAAGAGAGGTCTGGCAGAAAAAAATGATAAGTTTTTTGACAATAAGAGGCAAAATAATGGAGTAGTTAATGGAGAGCTGGGTTCTGGGTCATCAAATGATGATAATACAAGATTCAACAGGCCGACCAGAGATGGAAACAATGGGTTGCGGGCACAAAATCAAGTCCATGACAGCGTGCAGATTTTGCAACAACCACCTCAAGGTCCAGTTATATGCTGGGAGAGATTTCTCCCTGTAAGATCAATAAAAGTTCTGCTGGTGGAAGATGATGATTCAACACGCCATGTTGTGCGTGCTCTTTTACGAAATTGTAGTTATGAAGTCACTGCTGTTTCCAATGGTCTTCAAGCATGGAAAATCCTAGAAGATCCAGGAAATCACATTGATCTTGTCCTAACAGAGGTAGCTATACCTATTTTATCTGGAATAGGTCTTTTGTGCAAGATCATGAACCACAAAACACTGAAAAACATTCCTGTGATTATGATGTCATCCCATGATTCTATGGGTATAGCGTTTAAGTGTTTGTCAAAAGGTGCGGTTGACTTTCTAGTGAAACCTATTCGGAGGAATGAACTTAGAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGGGACACACAATAGAAAATCTGCCAAGACAAGAAGTAACGATGTGTCAGAAAATAATAGCGACAGCAGCGATGAGAATGATTGTGGAAGTAGAGACTTGACTGTTCGAGATGGAAGTGACAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTAGTTCAAGTTGGCAGTTCTCATCCAGTTTCACCTCATAAACAATTCGTTGATGCCCCTGATAGCACTTGTGCCGAAGTGATGCATACAAAGCCTGAGAAAGCTAGCAGTAGGTGGATGCATGCAACAGAAAAAGAGTGCCATGAACTGGTTGACCATCTTGATAATGTTGCAATGGGTAAAGATTTGGCTATGGGAATAACTTCGAATGTGCAACTAGAGCATCCACCTAAGGAGTTGCCTAGCAATCCTTCGGGTAAAGGGATAGATATTATGTCTGATGTAGATGGTAAGCATCTCAATAAGGGACACGGTAATGTCTGTGAAAAAGGGCAACTGGATTTCAACAGTGATAAAAACAAGCCTCAAGAAAATCAGGCTATGAATGTTGTTGATGTTACTGATAGCAGCAGTCCGCAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGATTTTCCGGTTTCTCACAAACTAAAGCAAGTTGTTCCTTTAAACAGCATCCTTCCCTTGAACTGACTTTGAAACGACTTGGAGAAACAAGAGATGCTAAAATTGTCACAAGTGATGAATGCAATATTTTGAGACATTCAGATCTGTCGGCATTCTCAAAATATAATACTGCTTCTTCTGCTAACCAGGTGATGTTTCATGGTCCTTAA 1476 0.4112 MSNNVGKRGLAEKNDKFFDNKRQNNGVVNGELGSGSSNDDNTRFNRPTRDGNNGLRAQNQVHDSVQILQQPPQGPVICWERFLPVRSIKVLLVEDDDSTRHVVRALLRNCSYEVTAVSNGLQAWKILEDPGNHIDLVLTEVAIPILSGIGLLCKIMNHKTLKNIPVIMMSSHDSMGIAFKCLSKGAVDFLVKPIRRNELRNLWQHVWRRCHSSSGSGSESGTHNRKSAKTRSNDVSENNSDSSDENDCGSRDLTVRDGSDNGSGTQSSWTKCLVQVGSSHPVSPHKQFVDAPDSTCAEVMHTKPEKASSRWMHATEKECHELVDHLDNVAMGKDLAMGITSNVQLEHPPKELPSNPSGKGIDIMSDVDGKHLNKGHGNVCEKGQLDFNSDKNKPQENQAMNVVDVTDSSSPQAESRDLNTPNGFSGFSQTKASCSFKQHPSLELTLKRLGETRDAKIVTSDECNILRHSDLSAFSKYNTASSANQVMFHGP 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121270g00008 491 FunFam Two-component response regulator-like PRR37 88 246 - -
Stsc121270g00008 491 MobiDBLite consensus disorder prediction 211 267 - -
Stsc121270g00008 491 Gene3D - 87 260 - -
Stsc121270g00008 491 CDD psREC_PRR 90 193 - -
Stsc121270g00008 491 SUPERFAMILY CheY-like 86 212 IPR011006 -
Stsc121270g00008 491 SMART REC_2 88 203 IPR001789 GO:0000160
Stsc121270g00008 491 MobiDBLite consensus disorder prediction 1 56 - -
Stsc121270g00008 491 PANTHER TWO-COMPONENT RESPONSE REGULATOR 89 363 IPR045279 GO:0009736
Stsc121270g00008 491 MobiDBLite consensus disorder prediction 370 397 - -
Stsc121270g00008 491 Pfam Response regulator receiver domain 90 201 IPR001789 GO:0000160
Stsc121270g00008 491 MobiDBLite consensus disorder prediction 21 56 - -
Stsc121270g00008 491 ProSiteProfiles Response regulatory domain profile. 89 207 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121270g00008 Stsc-Chr121270 35962 40272 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121270g00008 35 489 Response Regulator Gene Family AT5G60100 45.726 8.88e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc121270g00008 Response_reg 1.5e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121270g00008 K12129 - gmx:100803462 740.339