Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121270g00007 ATGAGTTGCTTTTGCTTCACAGCGAAATCAGGCGATAAAGCTGAGACTGATGATTATTCCCAAACTAAGAAAACCTCCAATGTCTCTTCTTCAGATAAGGTCAAAGTTGAACCGAAACAGAATGTTAAGAAAGAAGATAGTTCAAAGAATGTGAAGAAAGAAGTTAGTTTAAAGAGTGATCAACTTGCTCAGGATGTGAAGAATTTGAATATGAAACAGGATATTTCTGAGCAAGAAGACGATGGCGGTAATCAGGCGAAGACATTCACTTTTGAGGAACTTGCTGCTGCCACCGGAAATTTCAAATCGGATTGCTTTTTGGGCGAAGGAGGCTTCGGCAAGGTCTACAAAGGATACTTGCAGAAAATAAATCAGGTTGTAGCTATTAAGCAACTAGACCCTCATGGAGCTCAAGGAGTTCGGGAATTTGTGGCTGAAGTGGCGACACTGGGTAAGGCACACCACCCTAATCTGGTCAAGTTGATTGGGTATTGTGTCGAGGGAGACCAGAGGCTGCTGGTTTATGAGTATATGCCATTGGGATCTTTGGAGGACCATTTGCTAGATCTTCCGCCTGGTAAAAAACCGCTTGATTGGAATACAAGAATGCAAATAGCAGCGGGTGCAGCTAGGGGTTTGGAGTATTTGCACGATAAAATGAAGCCTCCCATCATATATCGTGACTTGAAATGCTCTAACATTTTGTTAGGTGACGGGTTTCATCCAAAGTTGTCCGATTTTGGGCTGGCAAAAGTAGGACCGAGTGGCGACAAGACCCATGTTTCAACAAGGGTTATGGGTACATACGGGTATTGCGCCCCGGATTATGCCATGACAGGACAGTTGACATTCAAGTCAGACATTTACAGCTTCGGGGTTGTTCTTTTGGAACTCATCACGGGCAGGAAGGCCATTGACCATACAAGAGCTGGCAGAGAACAAAATCTGGTTGCTTGGCATACTACATTGTTGGGCCAGCAGAGGAATAGCTGGAGCGATTCCATGCTGTGCAAAGCGGTGCCTAGGGTTAGCCCATCAAGCATCTTGGTGAGGAAACAAAACCCGATCTGA 1071 0.4491 MSCFCFTAKSGDKAETDDYSQTKKTSNVSSSDKVKVEPKQNVKKEDSSKNVKKEVSLKSDQLAQDVKNLNMKQDISEQEDDGGNQAKTFTFEELAAATGNFKSDCFLGEGGFGKVYKGYLQKINQVVAIKQLDPHGAQGVREFVAEVATLGKAHHPNLVKLIGYCVEGDQRLLVYEYMPLGSLEDHLLDLPPGKKPLDWNTRMQIAAGAARGLEYLHDKMKPPIIYRDLKCSNILLGDGFHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTRAGREQNLVAWHTTLLGQQRNSWSDSMLCKAVPRVSPSSILVRKQNPI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121270g00007 356 FunFam probable serine/threonine-protein kinase RLCKVII 70 177 - -
Stsc121270g00007 356 Pfam Protein kinase domain 106 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121270g00007 356 SUPERFAMILY Protein kinase-like (PK-like) 87 320 IPR011009 -
Stsc121270g00007 356 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Stsc121270g00007 356 FunFam Serine/threonine-protein kinase PBS1 178 349 - -
Stsc121270g00007 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Stsc121270g00007 356 SMART serkin_6 101 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121270g00007 356 MobiDBLite consensus disorder prediction 21 35 - -
Stsc121270g00007 356 Gene3D Phosphorylase Kinase; domain 1 66 177 - -
Stsc121270g00007 356 Gene3D Transferase(Phosphotransferase) domain 1 178 350 - -
Stsc121270g00007 356 PANTHER OS07G0668900 PROTEIN 32 336 - -
Stsc121270g00007 356 ProSiteProfiles Protein kinase domain profile. 101 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121270g00007 356 MobiDBLite consensus disorder prediction 36 57 - -
Stsc121270g00007 356 MobiDBLite consensus disorder prediction 1 57 - -
Stsc121270g00007 356 CDD STKc_IRAK 107 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121270g00007 Stsc-Chr121270 23984 27709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121270g00007 1 319 Glycoside Hydrolase AT3G07070 55.280 4.86e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc121270g00007 Pkinase 5.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121270g00007 - - gmx:100804000 486.493