Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121270g00006 ATGAGTTGCTTTTGCTTCACAGCGAAATCAGGCGATAAAGCTGAGACTGATGATTATTCCCAAACTAAGAAAACCTCCAATGTCTCTTCTTCAGATAAGGTCAAAGTTGAACCGAAACAGAATGTTAAGAAAGAAGATAGTTCAAAGAATGTGAAGAAAGAAGTTAGTTTAAAGAGTGATCAACTTGCTCAGGATGTGAAGAATTTGAATATGAAACAGGATATTTCTGAGCAAGAAGACGATGGCGGTAATCAGGCGAAGACATTCACTTTTGAGGAACTTGCTGCTGCCACCGGAAATTTCAAATCGGATTGCTTTTTGGGCGAAGGAGGCTTCGGCAAGGTCTACAAAGGATACTTGCAGAAAATAAATCAGGTTGTAGCTATTAAGCAACTAGACCCTCATGGAGCTCAAGGAGTTCGGGAATTTGTGGCTGAAGTGGCGACACTGGGTAAGGCACACCACCCTAATCTGGTCAAGTTGATTGGGTATTGTGTCGAGGGAGACCAGAGGCTGCTGGTTTATGAGTATATGCCATTGGGATCTTTGGAGGACCATTTGCTAGATCTTCCGCCTGGTAAAAAACCGCTTGATTGGAATACAAGAATGCAAATAGCAGCGGGTGCAGCTAGGGGTTTGGAGTATTTGCACGATAAAATGAAGCCTCCCATCATATATCGTGACTTGAAATGCTCTAACATTTTGTTAGGTGACGGGTTTCATCCAAAGTTGTCCGATTTTGGGCTGGCAAAAGTAGGACCGAGTGGCGACAAGACCCATGTTTCAACAAGGGTTATGGGTACATACGGGTATTGCGCCCCGGATTATGCCATGACAGGACAGTTGACATTCAAGTCAGACATTTACAGCTTCGGGGTTGTTCTTTTGGAACTCATCACGGGCAGGAAGGCCATTGACCATACAAGAGCTGGCAGAGAACAAAATCTGGTTGCTTGGGCAAGACCGTTATTTAGAGACCGGAGAAAGTTCTCGCAAATGGTCGATCCTTTGCTTGAAGGTCATTACCCCACGAGAGGTTTATACCAAGCTCTTGCAATTGCGGCGATGTGTGTTCAAGAGCAGCCTAATATGCGCCCGGTTATAGTTGATGTTGTTACAGCTCTAAACTACCTCGCATCGCAGAAGTACAATCCCCAAATTCCTCCTCCTGTACAGGGCTCTACGAGAAATCCGCAAGCGAGAAAGGACGGAGATGAAGGCGGTAATCAGAATGTAAACTAG 1242 0.4493 MSCFCFTAKSGDKAETDDYSQTKKTSNVSSSDKVKVEPKQNVKKEDSSKNVKKEVSLKSDQLAQDVKNLNMKQDISEQEDDGGNQAKTFTFEELAAATGNFKSDCFLGEGGFGKVYKGYLQKINQVVAIKQLDPHGAQGVREFVAEVATLGKAHHPNLVKLIGYCVEGDQRLLVYEYMPLGSLEDHLLDLPPGKKPLDWNTRMQIAAGAARGLEYLHDKMKPPIIYRDLKCSNILLGDGFHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTRAGREQNLVAWARPLFRDRRKFSQMVDPLLEGHYPTRGLYQALAIAAMCVQEQPNMRPVIVDVVTALNYLASQKYNPQIPPPVQGSTRNPQARKDGDEGGNQNVN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121270g00006 413 FunFam probable serine/threonine-protein kinase RLCKVII 71 177 - -
Stsc121270g00006 413 CDD STKc_IRAK 107 376 - -
Stsc121270g00006 413 Gene3D Transferase(Phosphotransferase) domain 1 178 387 - -
Stsc121270g00006 413 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Stsc121270g00006 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Stsc121270g00006 413 MobiDBLite consensus disorder prediction 21 35 - -
Stsc121270g00006 413 Pfam Protein kinase domain 106 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121270g00006 413 PANTHER OS07G0668900 PROTEIN 32 386 - -
Stsc121270g00006 413 SUPERFAMILY Protein kinase-like (PK-like) 87 391 IPR011009 -
Stsc121270g00006 413 ProSiteProfiles Protein kinase domain profile. 101 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121270g00006 413 MobiDBLite consensus disorder prediction 385 413 - -
Stsc121270g00006 413 MobiDBLite consensus disorder prediction 36 57 - -
Stsc121270g00006 413 MobiDBLite consensus disorder prediction 1 57 - -
Stsc121270g00006 413 Gene3D Phosphorylase Kinase; domain 1 68 177 - -
Stsc121270g00006 413 FunFam Serine/threonine-protein kinase PBS1 178 392 - -
Stsc121270g00006 413 SMART serkin_6 101 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121270g00006 Stsc-Chr121270 23984 27709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121270g00006 1 380 Glycoside Hydrolase AT3G07070 54.047 2.46e-146 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Stsc121270g00006 Pkinase 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121270g00006 - - gmx:100804000 618.616