Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121270g00003 ATGGAGGAGAAATCATCGTCGTCGTCAACGAGAACGACGTCGTTTCGGAGAGACTCTAACGGCTCACTCCAAGTGTTCAACCCTTCTTCTTCCCACGAGAAACCACAAAGCTCGCCTTTGAGATCTCAACCTCCATGGAAAGCATGGCTAGAGCAACCGCAAGCTTCCAAATCCGCTCCCTCGGAAGACACCAACGCCTCCACCTCATGGGATGCGGCGGCGCAGAGGGCGGCAGAGTGGGGAGTAGTGCTGAAGACGGACACGGAGACAGTAGGAAAGCCACGGGAAATAGCGCGTGGGGCATCAGGCGGCGGCGGAGGGAGTAGCAGTAGTGATGTGAGGGTGGCGCGTGGAGTTCCTCGCGTATCGGAGGATGTTCGAGATGCGCTTTCAACGTTTCAACAAACTTTCATAGTTTCGGACGCCATGAAAGCAGATTATCCAATACTGTATGCGAGCGGCGGTTTCTTCAACATGACCGGTTACACCTCCAAAGAAGTCATTGGCAGAAACTGTCGGTTTTTACAGGGAGCAGGTACAGATCCAGCTGAGGTGGCAAAGATCAGGGAAGCTTTGGTAAGGGGGACGACTTATTGTGGAAGGTTGCTTAACTACAAGAAAGATGGCACTCCCTTCTGGAACCTTCTCACTGTTTCTCCAATCAAGGACCAACATGGCAATCTCCTCAAATTTATTGGAATGCTAGTGGAGGTTAGCAAGCACACTGAGGGGTCCAAGGAAAACATGCTACGCCACAATGGACTCCCCGAATCATTGATTCGATATACCGTTAGAGAGAAAGAGAAGGCAAGGAGTTCGGCAAAAGAGTTAGTGGAAGCCATGAAGATGAAGATCAAGAGGCTGCCGCTGCCTGCATCCACCGAATCAGGAAACAACCAACACCGTCCCTTGACGATGTCTAACAATAAGAAGAAAGCACCTCCTCCAAGAGCATTATTAAGGAGAAAATCAGATAGTAGTGTCATTACTTCTTCTACACGTAAATCATCACTTGCACTTGCAGAACATTCTAGAACCAACTCATCAATGCACATTCCTGCTCTTCCTCTTAACAACAAACTTAATAAGAGTAGCTCCCGCCGTCGCCTTTCTTTCATGGGGTTCATCAGGATAAGTATGTCGAGCTATGAAGAAGCTGATGAGGACAGTTTTGAGAGTGAGGAGGATAATAATGATAATGTGATGATGAAGGAAAAGAGAAAGGGGTTTGATCTTGCTACCACACTCGAGCGCATTGAGAAGAACTTTGTTATTACTGATCCAAGGCTACCCGATAATCCTATAATCTTTGCATCTGATAGCTTCTTAGAACTTACAGAGTATAGTAGGGAAGAGATCTTGGGAAGAAACTGCAGATTTCTGCAAGGACCTGAAACTGATCGAGCTACAGTGAGAAAAATTAGAGAGGCTATTGACAATCAAATAGAAATTACTGTTCAGCTCATTAATTATACAAAAAGTGGTAAGAAGTTTTGGAATCTGTTTCATTTGCAACCTATGAGAGATCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTTGATGGTAGCCAACATTTGGAGCCTCTTCACAACTGCATTGCAGATGATACTGCCATAGAGGGACAGCTATTGGTAAAACAAACTGCTGAAAATGTTGATGATGCTGTTAGAGAACTTCCTGATGCTAATATGAAACCAGAAGATCTATGGATGAACCATTCAAAAGTGGTTCATCCTAAACCTCATAGAAAAGATGGTGCTGCTTGGACAGCTATTCAAAAGATTCTGGAGAGTGGAGAACAGATAGAGTTGAAGCATTTTAGGCTAGTTAAACCTTTGGGAGCAGGAGATACTGGCAGTGTGTATTTGGTGGAGCTATGTGGAAGTGGACAATACTTTGCAATGAAGGCAATGCAGAAAGATGTGATGATGAATCGTAACAAGGTGCATAGAGCTTCCATAGAGAGACAAATCCTTGACATGTTGGATCACCCTTTTCTTCCTGCTTTATATGCTTCCTTTCAGACTCAAACACATATTTGTTTGATAACTGATTACTGCCCTGGTGGTGAATTATTCCTACTTCTTGATCGCCAGCCATCTAAGGTTCTCATGGAAGATGCTGCCAGATTTTATGCTGCTGAGGTAGTGGTTGCATTGGAGTACCTTCATTGTCAAGGAATAATTTACCGAGATTTGAAGCCAGAAAATGTGTTAATTCAGAGCAATGGACATGTTTCTCTAACAGATTTTGACTTATCATGTTTAACAACCAGCAAACCACAGCTTATAACTCCAACTACAAATGAAAAGAAGAAACATCAAAAAGTTCCAGAAACTCCAATATTTATGGCGGAACCTATGAGAGAATCAAATTCTTTTGTTGGCACAGAAGAGTATATAGCTCCGGAAATTGTAACGGGTGCAGGACATACTAGTGCTGTTGATTGGTGGGCTCTGGGAATTCTTTTATATGAAATGCTTTATGGATATACGCCATTCAGAGGAAAGAATAGGCAAAAAACATTTACAAATATTCTCAATAAGGATCTTAACTTTCCCACAAATAAACAGGTGAGTGTGCATGCAAAGCAATTAATGCATAAGTTGTTGCAGAAAGATCCCAAAAGCAGAATGGGTTCACAAGGAGGAGCTAATGAAATTAAGAAACACTCATTCTTTCGGGGTGTTAATTGGGCCCTCGTCAGATGCATGAATCCTCCTTCGCTTGAGGTTCCTCTCTTTGAGAAAACTGAGGAAGAAGAGCAAGTAATAAAAGATGTAAATCCGGATATAGAAGAAATAAATGTCTTCTAG 2823 0.4307 MEEKSSSSSTRTTSFRRDSNGSLQVFNPSSSHEKPQSSPLRSQPPWKAWLEQPQASKSAPSEDTNASTSWDAAAQRAAEWGVVLKTDTETVGKPREIARGASGGGGGSSSSDVRVARGVPRVSEDVRDALSTFQQTFIVSDAMKADYPILYASGGFFNMTGYTSKEVIGRNCRFLQGAGTDPAEVAKIREALVRGTTYCGRLLNYKKDGTPFWNLLTVSPIKDQHGNLLKFIGMLVEVSKHTEGSKENMLRHNGLPESLIRYTVREKEKARSSAKELVEAMKMKIKRLPLPASTESGNNQHRPLTMSNNKKKAPPPRALLRRKSDSSVITSSTRKSSLALAEHSRTNSSMHIPALPLNNKLNKSSSRRRLSFMGFIRISMSSYEEADEDSFESEEDNNDNVMMKEKRKGFDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRATVRKIREAIDNQIEITVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHLEPLHNCIADDTAIEGQLLVKQTAENVDDAVRELPDANMKPEDLWMNHSKVVHPKPHRKDGAAWTAIQKILESGEQIELKHFRLVKPLGAGDTGSVYLVELCGSGQYFAMKAMQKDVMMNRNKVHRASIERQILDMLDHPFLPALYASFQTQTHICLITDYCPGGELFLLLDRQPSKVLMEDAARFYAAEVVVALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTTSKPQLITPTTNEKKKHQKVPETPIFMAEPMRESNSFVGTEEYIAPEIVTGAGHTSAVDWWALGILLYEMLYGYTPFRGKNRQKTFTNILNKDLNFPTNKQVSVHAKQLMHKLLQKDPKSRMGSQGGANEIKKHSFFRGVNWALVRCMNPPSLEVPLFEKTEEEEQVIKDVNPDIEEINVF 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121270g00003 940 FunFam LOV domain-containing protein 397 561 - -
Stsc121270g00003 940 SMART pac_2 485 527 IPR001610 -
Stsc121270g00003 940 SMART pac_2 199 241 IPR001610 -
Stsc121270g00003 940 Gene3D PAS domain 397 561 - -
Stsc121270g00003 940 MobiDBLite consensus disorder prediction 54 72 - -
Stsc121270g00003 940 SUPERFAMILY PYP-like sensor domain (PAS domain) 145 235 IPR035965 -
Stsc121270g00003 940 FunFam LOV domain-containing protein 608 692 - -
Stsc121270g00003 940 Gene3D Phosphorylase Kinase; domain 1 608 692 - -
Stsc121270g00003 940 SUPERFAMILY PYP-like sensor domain (PAS domain) 424 523 IPR035965 -
Stsc121270g00003 940 MobiDBLite consensus disorder prediction 292 307 - -
Stsc121270g00003 940 Gene3D Transferase(Phosphotransferase) domain 1 693 910 - -
Stsc121270g00003 940 CDD STKc_phototropin_like 607 915 - -
Stsc121270g00003 940 Pfam PAS domain 431 523 IPR000014 -
Stsc121270g00003 940 Pfam PAS domain 145 239 IPR000014 -
Stsc121270g00003 940 ProSitePatterns Serine/Threonine protein kinases active-site signature. 730 742 IPR008271 GO:0004672|GO:0006468
Stsc121270g00003 940 ProSiteProfiles PAC domain profile. 196 250 IPR000700 -
Stsc121270g00003 940 ProSiteProfiles PAC domain profile. 482 536 IPR000700 -
Stsc121270g00003 940 ProSiteProfiles PAS repeat profile. 412 481 IPR000014 -
Stsc121270g00003 940 SUPERFAMILY Protein kinase-like (PK-like) 594 918 IPR011009 -
Stsc121270g00003 940 ProSiteProfiles PAS repeat profile. 122 171 IPR000014 -
Stsc121270g00003 940 MobiDBLite consensus disorder prediction 324 345 - -
Stsc121270g00003 940 MobiDBLite consensus disorder prediction 7 43 - -
Stsc121270g00003 940 ProSiteProfiles Protein kinase domain profile. 609 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121270g00003 940 Pfam Protein kinase domain 610 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121270g00003 940 MobiDBLite consensus disorder prediction 91 114 - -
Stsc121270g00003 940 NCBIfam PAS domain S-box protein 433 523 IPR000014 -
Stsc121270g00003 940 NCBIfam PAS domain S-box protein 148 243 IPR000014 -
Stsc121270g00003 940 SMART serkin_6 609 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121270g00003 940 MobiDBLite consensus disorder prediction 1 72 - -
Stsc121270g00003 940 SMART pas_2 124 193 IPR000014 -
Stsc121270g00003 940 SMART pas_2 410 479 IPR000014 -
Stsc121270g00003 940 MobiDBLite consensus disorder prediction 288 345 - -
Stsc121270g00003 940 FunFam Putative LOV domain-containing protein 136 289 - -
Stsc121270g00003 940 PANTHER FLIPPASE KINASE 1-RELATED 313 918 - -
Stsc121270g00003 940 ProSitePatterns Protein kinases ATP-binding region signature. 615 638 IPR017441 GO:0005524
Stsc121270g00003 940 Gene3D PAS domain 136 290 - -
Stsc121270g00003 940 CDD PAS 149 238 IPR000014 -
Stsc121270g00003 940 FunFam Putative LOV domain-containing protein 693 908 - -
Stsc121270g00003 940 CDD PAS 423 523 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121270g00003 Stsc-Chr121270 11624 17516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121270g00003 2 940 AGC Kinase Gene Family AT3G45780 61.275 0.0 1196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc121270g00003 Pkinase 5.8e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121270g00003 K20715 - gmx:100804524 1244.18