Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121268g00006 ATGGCATGCAATAGCAGTGATAATACTGGGAAGACAATCAGATGCAAAGCTGCAATATGCAGAAAAGCAGGTGAACCTCTTGTTATAGAGGAAATTGAGGTTGACCCACCAAAAGCTTGGGAGGTTCGGATCAAGATTCTACTCACTTCTCTCTGTCACTCTGATGTAACCTTCTGGAAAATGGACACAGCTCTTGTAGCAAAATTTCCAAGAATTTTTGGACACGAAGCTGTAGGAGTTGTGGAGAGCATAGGAGAGCACGTGGAAGAAGTGAAACAAGGGGACACAGTAGTCCCTGTGTTCCTTGCAAACTGCGGAGAATGCAGGGATTGTAAGAGTCCCAAGAGCAACCAATGCTCGAAATTCGGGAAAAAGCTTTACAATGGAATGCCAAGAGATGGAACAAGCAGATTTAGGGATATGAATGGCCAAACCGTGTATCATTTCTTCTGTGTTTCGAGCTTCTCAGAGTACTCTGTCGTGGACGTGGCACATTTGGTCAACATTAATCATTATCCCCTTCCTCCGGAGAAGGCTTGCTTGCTCAGTTGTGGTATTTCAACAGGGTTGGGAGCGGCGTGGAAAGAGGCTGACGTAGAAGAAGGGTCAACAGTGGCGATTTTTGGGCTTGGAGCTGTAGGCCTTGCTGTTGCTGTAGGAGCAAAGCAACGAGGAGCGACAAAGATCATAGGCGTCGATATTAATGATGAAAAATTTGAAATAGGAAAAAGATTTGGAATTACTGATTTTGTGAATCCCTCCACTTGTGGAGACAAATCAGTGAGTGAGGTGATTAAGGAAATGACAAATGGTGGTGCTGATTACTGCTTCGAGTGCATAGGCTTGTCTTCACTAATGGCGGAGGCTTTTAACAGTAGCCGGAATGGTTGGGGGAAAACGGTGATATTAGGAGTGGAAATGCATGGTTCGCAATTGACATTGAATCCTTATCTCTTGGGGAGAACGGTGATATTATCGTTGTTTGGAGGTATCAAACCCAAATCTGATATCCCCCTCCTTGCTAACAAGTACTTGGACAAAGACCTTAGCTTGGAGGGATTCATAACGCACGAGGTGCCCTTCAAGGACATTAACAAAGCTTTTGACTATCTCCAGCAAGGAAAGAGCCTCCGCTGCATTATAAACATGGATCCTTAA 1158 0.4465 MACNSSDNTGKTIRCKAAICRKAGEPLVIEEIEVDPPKAWEVRIKILLTSLCHSDVTFWKMDTALVAKFPRIFGHEAVGVVESIGEHVEEVKQGDTVVPVFLANCGECRDCKSPKSNQCSKFGKKLYNGMPRDGTSRFRDMNGQTVYHFFCVSSFSEYSVVDVAHLVNINHYPLPPEKACLLSCGISTGLGAAWKEADVEEGSTVAIFGLGAVGLAVAVGAKQRGATKIIGVDINDEKFEIGKRFGITDFVNPSTCGDKSVSEVIKEMTNGGADYCFECIGLSSLMAEAFNSSRNGWGKTVILGVEMHGSQLTLNPYLLGRTVILSLFGGIKPKSDIPLLANKYLDKDLSLEGFITHEVPFKDINKAFDYLQQGKSLRCIINMDP 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121268g00006 385 SUPERFAMILY GroES-like 334 381 IPR011032 -
Stsc121268g00006 385 FunFam S-(hydroxymethyl)glutathione dehydrogenase 189 325 - -
Stsc121268g00006 385 Pfam Alcohol dehydrogenase GroES-like domain 41 168 IPR013154 -
Stsc121268g00006 385 SUPERFAMILY GroES-like 9 199 IPR011032 -
Stsc121268g00006 385 Pfam Zinc-binding dehydrogenase 212 330 IPR013149 -
Stsc121268g00006 385 Gene3D - 18 378 - -
Stsc121268g00006 385 PANTHER ALCOHOL DEHYDROGENASE 10 381 - -
Stsc121268g00006 385 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Stsc121268g00006 385 Gene3D - 189 326 - -
Stsc121268g00006 385 FunFam Alcohol dehydrogenase 6 18 204 - -
Stsc121268g00006 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 345 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121268g00006 Stsc-Chr121268 33176 36950 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121268g00006 41 373 Monolignol Biosynthesis Gene Families AT2G21730 25.816 5.93e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121268g00006 K00121 - qsu:112023922 573.163