Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121262g00006 ATGAGGGAAGAAGATTCAAACTGGTTCGCCAGATGGGAAGATGAACTGCCTCCGCCGGAGGAACTCATGCCTTTATCGCAAACCCTAATCACACCCGATCTTGCCATCGCCTTCGACATCCCCAGCCCTCACACCCCAACCGCGCCACCCACCGCCACCCCAACCACCCCCAACCACCATCTCCACCACCACCAACAACCACAACCACAACCACCTTCAAACCCTTCCCCCTCGCATCAGCAACAACCCTCCTCCGGTGGCGACTTCGCCGATTCCGGCGATCTCGGCTCCGGCGCCGCCGGCGAGGAGCCTGCCAGAACCCTCAAGAGGCCTCGCCTTGTTTGGACCCCACAGCTCCACAAGCGCTTCGTCGACGCCGTTGCACACCTCGGAATCAAGAACGCCGTTCCGAAGACCATAATGCAGCTCATGAGCGTTGACGGATTAACTCGCGAGAACGTCGCCAGCCATCTCCAGAAGTACCGCCTCTACCTCAAGCGCATGCAGGGACTCTCCGCCGCCGGACCCGGCGGAGGAGGAGCCGGTGGCGGTGGATCCGATGCTGCCACCGATCATCTCTTCGCCAGCTCCCCCGTGCCGGCGCATTTCCTCCATCCGGCTGCCGCGGCAGCGGGCGGGAGGCCTAATTCGGAGCATTTCCTGCCGTTTGTGCCGGTTCCGGCGATGCACCACCAGCAACACCACCACCAGATGGCTGCCGCAGCTGCTGGTGCCGCTGCGATGCAGCACGCCCAGCTGCAGCAGCAGTTCCATAGGCAGGCGGCCGGGCATTTTGGGTCGCCGCCGAATGGGCACTTTGAGCATGCTTTCTTGTCAAGGCAGCAGCAGCAGCAGCAGCCGCAGAATCAACAGCAGCCATTCAATAGAATGGGTGGAGGTGTGTCTGGATATGTAGAGGACATGGAATCTGCTAATGCATCTGGTGGAAGGAAGGTTCTTACTCTTTTTCCAACAGGAGATGATTGA 987 0.6049 MREEDSNWFARWEDELPPPEELMPLSQTLITPDLAIAFDIPSPHTPTAPPTATPTTPNHHLHHHQQPQPQPPSNPSPSHQQQPSSGGDFADSGDLGSGAAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSAAGPGGGGAGGGGSDAATDHLFASSPVPAHFLHPAAAAAGGRPNSEHFLPFVPVPAMHHQQHHHQMAAAAAGAAAMQHAQLQQQFHRQAAGHFGSPPNGHFEHAFLSRQQQQQQPQNQQQPFNRMGGGVSGYVEDMESANASGGRKVLTLFPTGDD 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121262g00006 328 SUPERFAMILY Homeodomain-like 107 167 IPR009057 -
Stsc121262g00006 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 166 IPR017930 -
Stsc121262g00006 328 NCBIfam myb-like DNA-binding domain, SHAQKYF class 111 163 IPR006447 GO:0003677
Stsc121262g00006 328 MobiDBLite consensus disorder prediction 278 297 - -
Stsc121262g00006 328 MobiDBLite consensus disorder prediction 1 109 - -
Stsc121262g00006 328 MobiDBLite consensus disorder prediction 1 18 - -
Stsc121262g00006 328 FunFam Two-component response regulator 106 169 - -
Stsc121262g00006 328 MobiDBLite consensus disorder prediction 278 328 - -
Stsc121262g00006 328 Pfam Myb-like DNA-binding domain 114 162 IPR001005 -
Stsc121262g00006 328 Gene3D - 107 169 - -
Stsc121262g00006 328 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 300 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121262g00006 Stsc-Chr121262 26046 27032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121262g00006 1 328 G2-like Transcription Factor Family AT3G10760 56.620 1.35e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc121262g00006 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121262g00006 - - aip:107623693 425.246