Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121262g00005 ATGGAAGCTGTAGAGTGGCCCCAGAAGCACCGTGATGCATTCAACCGTATTGGGACTCGCCCTCCTACAGGTGTATTGATGTTTGGGCCTCCAGGTTGTAGCAAAACCCTCATGGCACGAGCAGTTGCTTCTGAAGCTGGGCTGAACTTCTTAGCTGTCAAGGGTCCTGAACTCTTCAGTAAATGGGTTGGTGAATCAGAGAAGGCTGTCAGATCATTGTTTGCAAAAGCAAGGACCAATGCTCCATCCATTGTATTTTTTGATGAAATTGATAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGAGAGTAAATGTCACTGTCATAGCTGCTACAAATAGGCCAGATAAGATTGATCCTGCCCTTTTAAGACCAGGACGCTTTGATCGCCTGCTTTATGTTGGACCTCCAAATGAGAGAGACAGAGAAGATATATTTCGCATTCATTTGCATAAAATTCCATGCGAAGCTGATGTTAGCATTAAAGAACTTGCTAGCCTCACAGATGGTTATACTGGAGCTGATATATCACTGATATGTCGAGAGGCAGCCGTTGCAGCAATTGAGGAGAACCTTGGTGCTTCAGTTATAACAATGAAGCATTTGAAGAAGGCAATCAATCAGGGCCAGCCATCTGAAGTACAGTCCTACCAGAAGCTGTCAGCAAAGTTTCAAAGGGCTGTTCGCAGCTGTGATATAAATCTTGATGACATGCCGCACAAAAGTGGATATACTTCCTTCAACATTCGGAAGGTCCTAAAATATTGCGCATTGTTCCTTCCTATTCCAGCAGTCATTCTTTATTTGCGGACGACACCAAGTGGTTAG 849 0.4441 MEAVEWPQKHRDAFNRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARTNAPSIVFFDEIDSLAVTRGKESDGVSVSDRRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNERDREDIFRIHLHKIPCEADVSIKELASLTDGYTGADISLICREAAVAAIEENLGASVITMKHLKKAINQGQPSEVQSYQKLSAKFQRAVRSCDINLDDMPHKSGYTSFNIRKVLKYCALFLPIPAVILYLRTTPSG 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121262g00005 282 Pfam ATPase family associated with various cellular activities (AAA) 25 142 IPR003959 GO:0005524|GO:0016887
Stsc121262g00005 282 FunFam calmodulin-interacting protein 111 isoform X1 1 143 - -
Stsc121262g00005 282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 217 IPR027417 -
Stsc121262g00005 282 Gene3D - 2 143 IPR027417 -
Stsc121262g00005 282 CDD RecA-like_CDC48_r2-like 1 141 - -
Stsc121262g00005 282 ProSitePatterns AAA-protein family signature. 113 131 IPR003960 GO:0005524|GO:0016887
Stsc121262g00005 282 PANTHER AAA-FAMILY ATPASE 1 233 - -
Stsc121262g00005 282 Gene3D - 144 223 - -
Stsc121262g00005 282 SMART AAA_5 21 145 IPR003593 GO:0016887
Stsc121262g00005 282 Pfam AAA+ lid domain 165 211 IPR041569 -
Stsc121262g00005 282 FunFam spermatogenesis-associated protein 5-like protein 1 144 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121262g00005 Stsc-Chr121262 18575 20557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121262g00005 1 267 Calmodulin-binding Proteins AT3G56690 70.463 1.15e-131 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121262g00005 - - gmx:100788600 435.261