Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121262g00004 ATGCCTTCTTCGAGTTCCAGTAAGAAGAAGCATTCCAAGTCAAAGCCCGAAGCTGCTGCACCACCCGCTACTCCTCCTCCTCGAACGCCGTCGCGCCCCGACGTCGAGACCGACCTCGCTGCTTCTCTCTGCCTTCCAGAAGCTTCTCGAAGGTACCCTTCGTTCATCGGACCATCTGCCTTCGTCGCCCAAGTCTCCGCCGTTGAAAATGGGCCTAATTCCAGGGACTCCAGAATCTGGCTCTCCGAGCCTGCCATGGTTTCCTCTTCTCTTGCCCCTGGTACTCTTGTTTCGGTGTCAATTGCTTCATCAATGAAAACAAGTGAGCAAATGAATCCTCTCCAGTCATTAGTTGATCAATGTGTTAGTTGCTACGGCTTGGAAACTGGGAAGACGTTGAACGATGATGCCACGGGGAATTACTTTGTGCTTGCAACTGTTTTCCCTTCTACCAAGGTTTTGAAGAATGGAGTACGTCTGTCCTCAAATATTTCTTGTACAATGGGGTGTCCTCCTTTGGGTACAATAGTGTTTGTTTACCCAGTACAGAAGCAGTACTTATCTGCTCTTGCAAATGGGAGCAATGAACTGCATTCTACAGAAAGTAATTGTCTCTTAGTATATAATTGCAAGGAATTGTATCTTCGGTTTTCTCCTCATAAAGATGGATTTCAATTGGATATTAATAACTCTGCCTCTATGATGAAATCCCATGTCCAATCAGACAATGATATTTTTGCATCTCCTAGCACACCTTCTAATGGATCAAAGTTTTCTAATGCTAGTGTGTTGTCTTCTCCAAGATTTGAAGATTCAGCGTCAAGTATGCCCATTCGGAATAGTCAATCTATGGCTTCATTCAATGTTATAGATGCATTAGGAGATGAAAGTTCCAAAAAATTACTTGAGGCATGTGCAACTTCATGGTTATTTTCTCGATATTTACTGCTAGGCAATCTTGTCTCTGTACCAATGTTTTCAGAAGTGTGCATTTTCCAAGTGATAGGAGCCAAAAAGGCACCAGCTTACAGAGCTGATAATTATTTTTCAAATGGGATCAGTAATTTGTATCTTGAGGATTCTGATGTAGCAGAAAATGTGAATGAGGCAATATTTGTCAATTGTGAAACAAAGGTATTTTTATATTTGGAATCAAATGCAGCATCTGAAGAGCCAACTCAAACAGATTTACCCAGTGAAAAATGTAAAGCAAAGGTTGCTAATCCTAGCATATATGATAATATTTCCAAACTGGGTGGTCTATCTAAAGAATATACAGTTTTAAAGGATATAATTTCTTCATCAGTAAAAGATGTTTTATCAAGCTTTGGTTTGCGTACCACAAGAGGAGTTCTTCTACATGGTCCACCTGGTACAGGGAAGACTTCCCTGGCTCAATTATGTGCTCGTGATGTTGGGGTTAAATTGTTTCAAATAAATGGACCTGAAATTGTCACCCAATATTTTGGGGAAAGTGAGCAAGCATTGCATGATGTTTTTGATTCAGCAATTCAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGAAAAGATGGAAGTGAAGAGTTATCTCAAAGAATGGTTGCAACATTGTTGAATTTGATGGATGGAATTAGTAGAACCGAAGGGTTACTTGTAATTGCTGCCACCAACAGGCCTGATCATATTGAGCCGGCTCTCAGACGACCTGGAAGATTTGACAAAGAAATCGAAATTGGTGTGCCATCCCCAAAACAACGCTTGGATATTTTGTTCACTCTTCTTTGTGGAGTGGATCACTCTCTCTCAGATTTACAAGTTGAACACCTTGCCACTGTCACTCATGGTTTTGTGGGTGCTGATCTGGCTGCCCTTTGCAATGAGGCAGCACTGATTTGTCTAAGACGTTATGCTAATTTAAAGAAGAGTTGTGATGATGCTTCCAACGATGTAACGGAGCAACCCAAACTGCTGAATGGCGAAACAAACTCTAGAGATCAATCAGGTATTGCAACTTCGTCTGTTTCAGAATCAGATATATCAGTGGCCTCCAATGCTGTATTTCATCGCTGTATGACGGAAACAACGTTGGAATCTATGGAAATAATTTCTGATAGTGGTGATAAAGACCACAATTTGAAAGTGAGTTTTGAATGTTTTCAGAAGGCCAGAATGAAAATAAGACCCAGTGCAATGAGAGAGGTATGA 2208 0.4126 MPSSSSSKKKHSKSKPEAAAPPATPPPRTPSRPDVETDLAASLCLPEASRRYPSFIGPSAFVAQVSAVENGPNSRDSRIWLSEPAMVSSSLAPGTLVSVSIASSMKTSEQMNPLQSLVDQCVSCYGLETGKTLNDDATGNYFVLATVFPSTKVLKNGVRLSSNISCTMGCPPLGTIVFVYPVQKQYLSALANGSNELHSTESNCLLVYNCKELYLRFSPHKDGFQLDINNSASMMKSHVQSDNDIFASPSTPSNGSKFSNASVLSSPRFEDSASSMPIRNSQSMASFNVIDALGDESSKKLLEACATSWLFSRYLLLGNLVSVPMFSEVCIFQVIGAKKAPAYRADNYFSNGISNLYLEDSDVAENVNEAIFVNCETKVFLYLESNAASEEPTQTDLPSEKCKAKVANPSIYDNISKLGGLSKEYTVLKDIISSSVKDVLSSFGLRTTRGVLLHGPPGTGKTSLAQLCARDVGVKLFQINGPEIVTQYFGESEQALHDVFDSAIQAAPAVVFIDELDAIAPARKDGSEELSQRMVATLLNLMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRLDILFTLLCGVDHSLSDLQVEHLATVTHGFVGADLAALCNEAALICLRRYANLKKSCDDASNDVTEQPKLLNGETNSRDQSGIATSSVSESDISVASNAVFHRCMTETTLESMEIISDSGDKDHNLKVSFECFQKARMKIRPSAMREV 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121262g00004 735 CDD RecA-like_CDC48_NLV2_r1-like 417 579 - -
Stsc121262g00004 735 Gene3D - 399 580 IPR027417 -
Stsc121262g00004 735 MobiDBLite consensus disorder prediction 1 37 - -
Stsc121262g00004 735 FunFam Calmodulin-interacting protein 111 582 735 - -
Stsc121262g00004 735 Gene3D - 582 729 - -
Stsc121262g00004 735 PANTHER AAA-FAMILY ATPASE 90 734 - -
Stsc121262g00004 735 FunFam Putative vesicular transport protein (CDC48) 402 580 - -
Stsc121262g00004 735 Pfam ATPase family associated with various cellular activities (AAA) 451 580 IPR003959 GO:0005524|GO:0016887
Stsc121262g00004 735 MobiDBLite consensus disorder prediction 651 673 - -
Stsc121262g00004 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 638 IPR027417 -
Stsc121262g00004 735 Pfam AAA+ lid domain 604 638 IPR041569 -
Stsc121262g00004 735 SMART AAA_5 447 583 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121262g00004 Stsc-Chr121262 13787 17994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121262g00004 7 735 Calmodulin-binding Proteins AT3G56690 46.871 1.75e-179 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121262g00004 - - gmx:100788600 911.368